View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_12 (Length: 500)
Name: NF17385_low_12
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 35491352 - 35491573
Alignment:
| Q |
6 |
gagatgaagtcaaaactaaaacaaacaattccttcaacaatacatattattttagtattttgattatctgtgttctagtaatttgctatgttgggagcat |
105 |
Q |
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| T |
35491352 |
gagaagaagtcaaaactaaaacaaataattccttcaacagtacatattattttagtattttgattacctgtgttctagtaatttgctatgttgggagcat |
35491451 |
T |
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| Q |
106 |
ttttcgcttgatttggtcttagtacactattataaggacttgagatacgcactaattcttggattagattttaaaacttgacgatggattaaaccaattt |
205 |
Q |
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| T |
35491452 |
ttttcgcttgatttggtcttagtacactattataaggacttgagatacgcactaattcttggattagattttaaaacttgacgatggattaaaccaattt |
35491551 |
T |
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| Q |
206 |
aaatatacagaaagtttgttgg |
227 |
Q |
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| T |
35491552 |
aaataaacagaaagtttgttgg |
35491573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 338 - 500
Target Start/End: Original strand, 35491684 - 35491846
Alignment:
| Q |
338 |
tattgaaccaatcaaaatttcatcttgcagcccataaaggattaagttacgccattgtatcagaagatggtatccgtcaccgtcactatggacctgaaat |
437 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35491684 |
tattgaaccaatcaaaatttcatcttgcagcccataaaggattaagttacgccattgtatcagaagatggtatccgtcaccgtcactatggacctgaaat |
35491783 |
T |
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| Q |
438 |
ttgtgttgacaatcaagagaatccagacagagtgtagcttagggaggaaggccaggagtggtc |
500 |
Q |
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| T |
35491784 |
ttgtgttgacaatcaagagaatccagacagagtgtagcttagggaggaaggccaggagtggtc |
35491846 |
T |
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