View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_13 (Length: 495)
Name: NF17385_low_13
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 14 - 476
Target Start/End: Complemental strand, 24203512 - 24203058
Alignment:
| Q |
14 |
caaaggaaccaataaaccttaatgcttaaaaagtatgtaaggtataaattcaaggacaagaaccaacctataaactcttgaagaatacttcaaggacaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24203512 |
caaaggaaccaataaaccttaatgcttaaaaagtatgtatggtataaattcaaggacaagaaccaacctataaactcttgcagaatacttcaaggacaa- |
24203414 |
T |
|
| Q |
114 |
gtcattaaattcaaagcggtgtaagtcaagaaaagatattccagtttagtaggtaacacctagaatttaggttgggtctaactcaaaccttacaaactgg |
213 |
Q |
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||||||||||||||| ||| |||||||| ||||||||||||||| | || || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
24203413 |
gtcattaaattcaaactggtttaagtcaacaaaagatattccagt-------ggaatacttagaatttaggttgggtctaactcagcccttacaaactgg |
24203321 |
T |
|
| Q |
214 |
cttgcaaggtgatgactgcatactcaaataacttcttcaagttgataatatccctcacatggatctcatgagatcttacaggatggagaaaatgtggccc |
313 |
Q |
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||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24203320 |
cttgcaaggtgatgactgcgtactcaaataacttcttcgagttgataatatccctcacatggatctcatgagatcttacaggatggagaaaatgaggccc |
24203221 |
T |
|
| Q |
314 |
ggcaaaaagatcgcaagagttgggactgtactttgtgacgacctcttgaagcgagcaagctaatcatggtggacattgcagggatcaaacaagacaatac |
413 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
24203220 |
gacaaaaagatcgcaagagttgggactgtactttgtgacgacctcttgaagcgagcaagctaatcatggtgcacattgcagggatcaaacaggacaatac |
24203121 |
T |
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| Q |
414 |
gaacgcatgagagtccatgtaagaaaatattatcaacccgaagaagctattgcgggtacgtaa |
476 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24203120 |
gaacacatgagagtccatgtaagaaaatattatcaacccgaagaagctattgcgggttcgtaa |
24203058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 29409796 - 29409987
Alignment:
| Q |
28 |
aaccttaatgcttaaaaagtatgtaaggtataaattcaaggacaagaaccaacctataaactcttgaagaatacttcaagga-ca---------aagtca |
117 |
Q |
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||||||||||||||||||||||||| |||| | |||||||||||||||| |||||||||||||| || ||| | ||| | || |||||| |
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| T |
29409796 |
aaccttaatgcttaaaaagtatgtatggtactagttcaaggacaagaacccgcctataaactcttgcagtatattccaaccaacacgatttgtgaagtca |
29409895 |
T |
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| Q |
118 |
ttaaattcaaagcggtgtaagtcaagaaaagatattccagtttagtaggtaacacctagaatttaggttgggtctaactcaaaccttacaaa |
209 |
Q |
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|||||||||||| |||||| ||||| ||||||||||||||||||| | |||| | ||||||||||| |||| ||||||||| ||||||||| |
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| T |
29409896 |
ttaaattcaaagaggtgtatgtcaataaaagatattccagtttagcaattaactcttagaatttagggtgggcctaactcaacccttacaaa |
29409987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 27560361 - 27560418
Alignment:
| Q |
14 |
caaaggaaccaataaaccttaatgcttaaaaagtatgtaaggtataaattcaaggaca |
71 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
27560361 |
caaaggaatcaataaaccttaatgcttaaaaagtatgtatggtattaattcaaggaca |
27560418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 27560428 - 27560486
Alignment:
| Q |
112 |
aagtcattaaattcaaagcggtgtaagtcaagaaaagatattccagtttagtaggtaac |
170 |
Q |
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|||||||| ||||||||| ||||||| |||| ||||| ||||| ||||||||||||||| |
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| T |
27560428 |
aagtcattcaattcaaagaggtgtaaatcaacaaaaggtattcaagtttagtaggtaac |
27560486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 27560771 - 27560841
Alignment:
| Q |
266 |
cctcacatggatctcatgagatcttacaggatggagaaaatgtggcccggcaaaaagatcgcaagagttgg |
336 |
Q |
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||||||||||||| ||||||| |||||| ||||| ||||| | ||||||| |||||||| | ||||||||| |
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| T |
27560771 |
cctcacatggatcgcatgagaccttacaagatggcgaaaacgaggcccgggaaaaagattgtaagagttgg |
27560841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 36667952 - 36668010
Alignment:
| Q |
112 |
aagtcattaaattcaaagcggtgtaagtcaagaaaagatattccagtttagtaggtaac |
170 |
Q |
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|||||||||||||||||| ||||||| || | ||| ||||||||||||||||||||| |
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| T |
36667952 |
aagtcattaaattcaaagaggtgtaaatcgacaaacagtattccagtttagtaggtaac |
36668010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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