View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_17 (Length: 465)
Name: NF17385_low_17
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 449
Target Start/End: Original strand, 26569675 - 26570107
Alignment:
| Q |
18 |
tttaggaggaggaggaagagatggtggtttggagataggtaaagttagtgatgagaagtagtaaaatacataggtacaaacagatgagtattttcccatt |
117 |
Q |
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| T |
26569675 |
tttaggaggaggaggaagagatggtggtttggagataggtaaagttagtgatgaaaagtagtaaaatacataggtacaaacagatgagtgttttcccatt |
26569774 |
T |
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| Q |
118 |
tatacgcaccaaatctaaannnnnnnncaacattttgtttgattctcatactgaattgtaatgatctacaacaagagtttctaaattggatgggtggtcc |
217 |
Q |
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| T |
26569775 |
tatacgcaccaaatctaattttttttctaacattttgtttgattctcatactgaattgtaatgatctacaacaagagtttctaaattggatgggtggtcc |
26569874 |
T |
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| Q |
218 |
ttgctaatactttttgaggctgtagcatttgatatagcattattagcatctatatatataatgcaaataactctaattctttgtttgtac--nnnnnnnn |
315 |
Q |
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| T |
26569875 |
ttgctaatactttttgaggctgtagcatttgatatagcattattagcatctatatatataatgcaaataactctaattctttgtttgtacaaaataaaaa |
26569974 |
T |
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| Q |
316 |
tccaattcatcgtgaatatatttttaaaagagttggaggttctaagttctaacccgtacaaagagtaatatattaacctaataaactaactattactccc |
415 |
Q |
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| T |
26569975 |
tccaattcatagtgaatatatttttaaaagagttggaggttctgagttctaacccgtacaaagagtaatatattaacctaataaactaactactactccc |
26570074 |
T |
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| Q |
416 |
ttcgtcccataataagtgggtttcttttattcat |
449 |
Q |
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| T |
26570075 |
ttcgtctcctaataagtgagttt-ttttattcat |
26570107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 26571417 - 26571476
Alignment:
| Q |
150 |
ttttgtttgattctcatactgaattgtaatgatctacaacaagagtttctaaattggatg |
209 |
Q |
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| T |
26571417 |
ttttgtttgattttcatactaaattataatgatctacgacaagagtttttaaattagatg |
26571476 |
T |
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