View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_18 (Length: 461)
Name: NF17385_low_18
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 34667237 - 34666806
Alignment:
| Q |
19 |
gaaaatacgctcatcaatcattcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatctcct |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34667237 |
gaaaatacgctcatcaatcattcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatctcct |
34667138 |
T |
|
| Q |
119 |
tcctggaccaaacataattgaactccataagaggtttaaaacttttctttgttttaatttgttactctggtttcaatgtcataatttatcattttatgac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34667137 |
tcctggaccaaacataattgaactccataagaggtttaaaacttttatttgttttaatttgttactctggtttcaatgtcataatttatcattttatgac |
34667038 |
T |
|
| Q |
219 |
aacaacaatcaacaaaaagttagataaaaagaagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggca |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34667037 |
aacaacaatcaacaaaaagttagataaaaagaagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggca |
34666938 |
T |
|
| Q |
319 |
caaaatattagagaggatttgtgctttggatcttccaaacaatccgttggatgatattattgaccaggtaatgattatttgtttattcatccccgtcttc |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34666937 |
caaaatattagagaggatttgtgctttggatcttccaaaaaatccgttggatgatattattgaccaggtaatgattatttgtttattcatccccgtcttc |
34666838 |
T |
|
| Q |
419 |
ttctttaatggtaccttcccttaacgattctt |
450 |
Q |
| |
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|||||||||||||||||||||||||||||||| |
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| T |
34666837 |
ttctttaatggtaccttcccttaacgattctt |
34666806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 26961037 - 26960606
Alignment:
| Q |
19 |
gaaaatacgctcatcaatcattcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatctcct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26961037 |
gaaaatacgctcatcaatcattcgttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatctcct |
26960938 |
T |
|
| Q |
119 |
tcctggaccaaacataattgaactccataagaggtttaaaacttttctttgttttaatttgttactctggtttcaatgtcataatttatcattttatgac |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26960937 |
tcctggaccaaacataattgaactccataagaggtttaaaacttttatttgttttaatttgttactctggtttcaatgtcataatttatcattttatgac |
26960838 |
T |
|
| Q |
219 |
aacaacaatcaacaaaaagttagataaaaagaagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggca |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26960837 |
aacaacaatcaacaaaaagttagataaaaagaagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggca |
26960738 |
T |
|
| Q |
319 |
caaaatattagagaggatttgtgctttggatcttccaaacaatccgttggatgatattattgaccaggtaatgattatttgtttattcatccccgtcttc |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26960737 |
caaaatattagagaggatttgtgctttggatcttccaaataatccgttggatgatattattgaccaggtaatgattatttgtttattcatccccgtcttc |
26960638 |
T |
|
| Q |
419 |
ttctttaatggtaccttcccttaacgattctt |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
26960637 |
ttctttaatggtaccttcccttaacgattctt |
26960606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 250 - 428
Target Start/End: Complemental strand, 26848441 - 26848262
Alignment:
| Q |
250 |
aagagtatgacagcgatgattattttcatgggattactgcagttatgacacagccatgcagtctaggcacaaaatattagagaggatttgtgctttggat |
349 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||| ||| || ||||||||||||||| ||| | | | || |||||||||| |||||||||||||||| |
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| T |
26848441 |
aagagtatgacagtgatgaatattttcgtgggattgctgtaggtatgacacagccatggagtgcaagaaaaatatattagagatgatttgtgctttggat |
26848342 |
T |
|
| Q |
350 |
cttccaaacaatccgttggatgatattattgaccaggtaa-tgattatttgtttattcatccccgtcttcttctttaatg |
428 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||| |||| ||| ||| |||||||| | | ||| ||||||||| |
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| T |
26848341 |
cttccaaacaatcccttggatgatattattgatcaggtaattgatcattcgttgattcatcctcattttcctctttaatg |
26848262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 19 - 216
Target Start/End: Complemental strand, 26848718 - 26848515
Alignment:
| Q |
19 |
gaaaatacgctcatcaatcattc---gttcccccaattggtgattttgttcttgagaaatgggcttgtgatttgtgcaaggataaaagtgacaaatatct |
115 |
Q |
| |
|
|||||||||||||||| |||| | || || |||||| | ||||||||||||||| ||||||| ||||||||||||||||||| || | || ||||| |
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| T |
26848718 |
gaaaatacgctcatcactcatgcttggtgccaccaattagcgattttgttcttgaggaatgggcatgtgatttgtgcaaggatacaaccgtaaactatct |
26848619 |
T |
|
| Q |
116 |
ccttcctggaccaaacataattgaactccataagaggtttaaaactt-----ttctttgttttaatttgttactctggtttcaatgtcataatttatcat |
210 |
Q |
| |
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|| ||||||| || | |||||||||||||| || ||| ||||||||| | ||| |||||||||| ||||||||||||||||||| ||||||||| |
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| T |
26848618 |
ccctcctggaacagatataattgaactccagaaaagg-ttaaaacttgtataattttttttttaatttggcactctggtttcaatgtcat-atttatcat |
26848521 |
T |
|
| Q |
211 |
tttatg |
216 |
Q |
| |
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|||||| |
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|
| T |
26848520 |
tttatg |
26848515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 18462651 - 18462578
Alignment:
| Q |
320 |
aaaatattagagaggatttgtgctttggatcttccaaacaatccgttggatgatattattgaccaggtaatgat |
393 |
Q |
| |
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||||||||||||| ||| || | |||||||||||||| ||||| |||||||| |||| |||||||||| |||| |
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| T |
18462651 |
aaaatattagagatcattcgttcgttggatcttccaaataatcctttggatgacattactgaccaggtagtgat |
18462578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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