View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_19 (Length: 440)
Name: NF17385_low_19
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 47899794 - 47900238
Alignment:
| Q |
1 |
atgtcgaataaaataattgttgctgtttaaaaaagcaataaagaatgattattatagaaattatcaacaaatgaatagtgagcaaagtgaaagaatcata |
100 |
Q |
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| T |
47899794 |
atgtcaaatcaaataattgttgctgtttaacaaagcaataaagaatgattattatagaaattatcaacaaatgaatagtgagcaaagtgaaataatcata |
47899893 |
T |
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| Q |
101 |
attaatcatgaaagtataaagcattacaaagaggaatataccttgcatagtaggcagcgacggcagccaagtagacagagtgaatccatttaggggaagt |
200 |
Q |
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| T |
47899894 |
attaatcatgaaagtataaagcattacaa-gaggaatataccttgcatagtaggcagcgacggcagccaagtagacagagtgaatccatttaggggaagt |
47899992 |
T |
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| Q |
201 |
gctatgaaacgcaaccttccataactgaacatgcttaaccatgaatttatattgaccttccatatcattcaatggccaccctgtatactccttccataca |
300 |
Q |
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| T |
47899993 |
gctatgaaacgcaaccttccataactgaacatgcttaaccatgaatttatattgaccttccatatcattcaatggccaccctgtatactccttccataca |
47900092 |
T |
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| Q |
301 |
tctttaacaaatatctgaaatttcaaaattagcatac------aaacttaaacataaacataagtttaagactttagagagatagcttccaagaaaaaga |
394 |
Q |
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| T |
47900093 |
tctttaacaaatatctgaaatttcaaaattagcatacaaacataaacataaacataaacataagtttaagactttagagagatagcttccaagaaaaaga |
47900192 |
T |
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| Q |
395 |
ttgtacgtatcgacaaaatccgtacaaataaagcgtaagacacgac |
440 |
Q |
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| T |
47900193 |
ttgtacctaacgacaaaatccgtacaaataaagtgtaagacacgac |
47900238 |
T |
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