View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_25 (Length: 397)
Name: NF17385_low_25
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 5 - 394
Target Start/End: Complemental strand, 39771656 - 39771287
Alignment:
| Q |
5 |
attgaatacctaacaatcaatttgtcaaccttggtcaaagagcattatttgtggcatgggactaccagcttccattctttaacaacatatcgttcacgtc |
104 |
Q |
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| T |
39771656 |
attgaatacctaacgatcaatttgtcaaccttggtcaaagagcattatttgtggcatgggactaccagcttt-----------aacatatctttcacgtc |
39771568 |
T |
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| Q |
105 |
agctcttacgcannnnnnncaatataaccaccctctacatgctatataaccatctaaatattgtcatttaattctacaaaataccatagtaaattaagag |
204 |
Q |
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| T |
39771567 |
agctcttacgcatttttttcaatataaccaccctctacatgctatataaccatctacctattgtcatttaattctacaaaataccatagtaaattaagag |
39771468 |
T |
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| Q |
205 |
ctatacaccatagtactactactacatacatatctgcaaaatcatggcaacaataaaagtgcacggaaaccctatctcaacggccaccatgcgggttact |
304 |
Q |
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| T |
39771467 |
ctatacaccata---------ctacatacatatctgcaaaatcatggcaacaataaaagtgcacggaagccctatctcaacggccaccatgcgggttact |
39771377 |
T |
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| Q |
305 |
gccactctgtatgaaaaggagcttgaatttgagtttgtaagcattaacatgaggaatggtgaacacaaaaaggaacccttcatctcactc |
394 |
Q |
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| T |
39771376 |
gcaactttgtatgaaaaggagcttgaatttgagtttgtaagcattaacatgaggaatggtgaacacaaaaaggaacccttcatatcactc |
39771287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 39756667 - 39756516
Alignment:
| Q |
243 |
aaatcatggcaacaataaaagtgcacggaaa-ccctatctcaacggccaccatgcgggttactgccactctgtatgaaaaggagcttgaatttgagtttg |
341 |
Q |
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| T |
39756667 |
aaatcatggcaacaataaaagtccatggaagtcccta-ctcaacggccaccatgcgggttactgcaactctgtatgaaaagcagattgagtttgagtttt |
39756569 |
T |
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| Q |
342 |
taagcattaacatgaggaatggtgaacacaaaaaggaacccttcatctcactc |
394 |
Q |
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| T |
39756568 |
ttaacattaacatgaggaatggagaacacaaaaaggaaccgttcatatcactc |
39756516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 39762021 - 39761870
Alignment:
| Q |
243 |
aaatcatggcaacaataaaagtgcacggaaa-ccctatctcaacggccaccatgcgggttactgccactctgtatgaaaaggagcttgaatttgagtttg |
341 |
Q |
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| T |
39762021 |
aaatcatggcaacaataaaagtccatggaagtcccta-ctcaacggccaccatgcgggttactgcaactctgtatgaaaagcagattgagtttgagtttt |
39761923 |
T |
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| Q |
342 |
taagcattaacatgaggaatggtgaacacaaaaaggaacccttcatctcactc |
394 |
Q |
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| T |
39761922 |
ttaacattaacatgaggaatggagaacacaaaaaggaaccgttcatatcactc |
39761870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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