View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_27 (Length: 390)
Name: NF17385_low_27
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 38087693 - 38087835
Alignment:
| Q |
12 |
atgaagcttaatactatcctgaagttgatcgtagttcgagaatttgttgtttaaaattcttaaattacgttctttctaaatggcccaaacacaggccaat |
111 |
Q |
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| T |
38087693 |
atgaagcttaatacaatccaaaagttgatcgtagttcgagaatttgttgtttaaaattcttaaattacgttctttctaaatggcccaaacacaggccaat |
38087792 |
T |
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| Q |
112 |
cacacatcctgaaagcataaacaaagtttctttttgaaagcat |
154 |
Q |
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| T |
38087793 |
cacacaacctgaaagcataaacaaagtttctttttgaaagcat |
38087835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 153 - 267
Target Start/End: Original strand, 38107944 - 38108058
Alignment:
| Q |
153 |
ataacattcagaccttcaactgcaataaagaataaaaaagatgaaagagggtcaccttagcacaacccctttccaaattgaaaaattgagttggaccgcc |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| |
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| T |
38107944 |
ataacattcagaccttcaactgcaataaagaataaaaaagatgaaagagggtcaccttagcgcaacccctttccaaattgaataattgagttggactgcc |
38108043 |
T |
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| Q |
253 |
attcacttaaattga |
267 |
Q |
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| T |
38108044 |
attcacttaaattga |
38108058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 128
Target Start/End: Complemental strand, 1386584 - 1386512
Alignment:
| Q |
56 |
tgttgtttaaaattcttaaattacgttctttctaaatggcccaaacacaggccaatcacacatcctgaaagca |
128 |
Q |
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| T |
1386584 |
tgttgtttaaaattctcaaattacgttcttttcaaatgacccaaagacaggccaaccaaacaacttgaaagca |
1386512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 40660877 - 40660757
Alignment:
| Q |
13 |
tgaagcttaatactatcctgaagtt-gatcgtagttcgagaatttgttgtttaaaattcttaaattacgttctttctaaatggcccaaacacaggccaat |
111 |
Q |
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|||||||||||||||| | ||||| ||| ||| |||| | ||||||||| ||||||||| ||||||||||||| ||||| || ||| | ||||||| |
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| T |
40660877 |
tgaagcttaatactattccaaagtttgatggtacctcgaaattttgttgttcaaaattctttaattacgttcttttcaaatgacctaaagataggccaac |
40660778 |
T |
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| Q |
112 |
cacacatcctgaaagcataaa |
132 |
Q |
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||||| |||||||||||||| |
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| T |
40660777 |
cacactacctgaaagcataaa |
40660757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 8387828 - 8387740
Alignment:
| Q |
66 |
aattcttaaattacgttctttctaaatggcccaaacacaggccaatcacacatcctgaaagcataaacaaagtttctttttgaaagcat |
154 |
Q |
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||||||| |||||| ||||||| || || |||||| ||||| ||| |||||| ||||| |||||| || || |||||||||||||||| |
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| T |
8387828 |
aattcttgaattacattctttccaattgacccaaagacaggacaaccacacaacctgagagcatagacgaatgttctttttgaaagcat |
8387740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 44
Target Start/End: Original strand, 50481853 - 50481885
Alignment:
| Q |
12 |
atgaagcttaatactatcctgaagttgatcgta |
44 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
50481853 |
atgaagcttaatactatcctaaagttgatcgta |
50481885 |
T |
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