View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17385_low_3 (Length: 763)
Name: NF17385_low_3
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 633; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 12 - 747
Target Start/End: Complemental strand, 26287254 - 26286525
Alignment:
| Q |
12 |
tgagatgaacggcaaaggtgaattataccactgctaacatttagctttattttccacttttttctattaataccaaggccgatttagtgctaaaatctat |
111 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26287254 |
tgagaagaacggcaaaggtgaattatgccagtgctaacatttagctttattttccacttttttctattaataccaaggccgatttagtgctaaaatctat |
26287155 |
T |
|
| Q |
112 |
aagtataccatatatgtttttgatacgcagatgttagttggtggttatttttattttcagggatattctgaacctgctgacaaaaaatctgttaagtatt |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26287154 |
aagtataccatatat---------acgcagatgttagttggtggttatttttattttcagggatattctcaacctgctgacaaaaaatctgttaagtatt |
26287064 |
T |
|
| Q |
212 |
atcatggacatgttgtttacctttccgactgtcttgattgtaggttaatttgaaggtgggcgtgctgcttcggacatggatccatatgtggtaacagcat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26287063 |
atcatggacatgttgtttacctttccgactgtcttgattgtaggttaatttgaaggtgggcgtgctgcttcggacatggatccatatgtggtaacagcat |
26286964 |
T |
|
| Q |
312 |
tactggaagagagaacggtattgtgggaaccaactctagaggttgaagcaccaggaatctcagaagctcgcattgaaggtctaaacctattaattaattg |
411 |
Q |
| |
|
|||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
26286963 |
tactggcagagagaacagtattgtggaaaccaactctagaggttgaagcaccaggaatctcagaaactcgcattgaaggtctaaacctattaattaattg |
26286864 |
T |
|
| Q |
412 |
cattttagatggagtcagcactgttgcagtctgtgagaagttggaaaggtctttaaatttccttttagattattaatgttgtgaagatcttgttgtctgg |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26286863 |
cattttagatggagtcagcactgttgcagtctgtgaggagttggaaaggtctttaaatttccttttagattattaatgttgtgaagatcttgttgtctgg |
26286764 |
T |
|
| Q |
512 |
acaaatgaggctgccttgcctagttattgtttattagatgaatgcgcattctatatc---agatatttcgttggttgtgtttccatatggtatggacaga |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26286763 |
acaaatgaggctgccttgcctagttattgtttatgagacgaatgcgcattctatatcagaagatatttcgttggttgtgtttccatatggtatggacaga |
26286664 |
T |
|
| Q |
609 |
attgcattgatgctttgcttggttatatacttaagatttacttttatttttctacaggtggctttcaaattttcaccttggaatgtttgttcgggctgtg |
708 |
Q |
| |
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|||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26286663 |
attgcattcatgttttgcttggttatatacttatgatttacttttatttttctataggtggctttcaaattttcaccttggaatgtttgttcgggctgtg |
26286564 |
T |
|
| Q |
709 |
agtaaagcttaattggaaaaaacttgactaccttcaaac |
747 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26286563 |
agtaaagcttaattggaaaaaacttgactaccttcaaac |
26286525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 12 - 294
Target Start/End: Complemental strand, 26312505 - 26312232
Alignment:
| Q |
12 |
tgagatgaacggcaaaggtgaattataccactgctaacatttagctttattttccacttttttctattaataccaaggccgatttagtgctaaaatctat |
111 |
Q |
| |
|
||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26312505 |
tgagaagaacggcaaaggtgaattatgccagtgctaacatttagctttattttccacttttttctattaataccaaggccgatttagtgctaaaatctat |
26312406 |
T |
|
| Q |
112 |
aagtataccatatatgtttttgatacgcagatgttagttggtggttatttttattttcagggatattctgaacctgctgacaaaaaatctgttaagtatt |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26312405 |
aagtataccatatat---------acgcagatgttagttggtggttatttttattttcagggatattctcaacctgctgacaaaaaatctgttaagtatt |
26312315 |
T |
|
| Q |
212 |
atcatggacatgttgtttacctttccgactgtcttgattgtaggttaatttgaaggtgggcgtgctgcttcggacatggatcc |
294 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26312314 |
atcatggacatgttgtttacctttccgactgtcttgattgtaggttaatttgaaggtgggcgtgctgcttcggacatggatcc |
26312232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 132; Significance: 4e-68; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 224 - 657
Target Start/End: Complemental strand, 7202779 - 7202362
Alignment:
| Q |
224 |
ttgtttacctttccgactgtcttgattgtaggttaatttgaaggtgggcgtgctgcttcggacatggatccatatgtggtaacagcattactggaagaga |
323 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||| || |||| ||||| | |||||| ||||||||||||||||||||||||| ||| ||| ||||| |
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|
| T |
7202779 |
ttgtttacctttgcttctgttttgattgtaggttacttggaagacaggcgtccggcttcgaacatggatccatatgtggtaacagccttattggcagaga |
7202680 |
T |
|
| Q |
324 |
gaacggtattgtgggaaccaactctagaggttgaagcaccaggaatctcagaagctcgcattgaaggtctaaacctattaattaattgcattttagatgg |
423 |
Q |
| |
|
| || |||||||||||||||||||||||| |||||| | | | |||||||| | |||||||| ||||||| ||||| |||||| || |
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|
| T |
7202679 |
gtacattattgtgggaaccaactctagaggctgaagctcttgcag-ctcagaagattgcattgaaagtctaaatctattgattaat------------gg |
7202593 |
T |
|
| Q |
424 |
agtcagcactgttgcagtctgtgagaagttggaaaggtctttaaatttccttttagattattaatgttgtgaagatcttgttgtctggacaaatgaggct |
523 |
Q |
| |
|
||||||||||| ||||||||||||| || | |||| ||||| | ||||| |||||||| | || || ||||||||||||| ||||||||||||||| |
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|
| T |
7202592 |
agtcagcactgctgcagtctgtgaggagcttgaaatctctttcactttccatttagatttattatattatgaagatcttgtt---tggacaaatgaggct |
7202496 |
T |
|
| Q |
524 |
gccttgcctagttattgtttattagatgaatgcgcattctatatcagatatttcgttggttgtgtttccatatggtatggacagaattgcattgatgctt |
623 |
Q |
| |
|
||| ||||||||||||| |||| |||||||||| |||| ||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||||||| | |
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|
| T |
7202495 |
gccatgcctagttattggttatgagatgaatgcacattgtatatcagatattacgttggctgtgtttgcatatggtatggacagagttgcattgatgc-t |
7202397 |
T |
|
| Q |
624 |
tgcttggttatatactt-aagatttacttttattt |
657 |
Q |
| |
|
|| || ||||||| ||| ||||||| ||||||||| |
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|
| T |
7202396 |
tgttttgttatattcttcaagatttgcttttattt |
7202362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 219 - 636
Target Start/End: Complemental strand, 7191553 - 7191118
Alignment:
| Q |
219 |
acatgttgtttacctttccgactgtcttgattgtaggttaatttgaaggtgggcgtgctgcttcggacatggatccatatgtggtaacagcattactgga |
318 |
Q |
| |
|
|||||||||||||||| | ||||| |||||| ||||||| || |||| | ||| | ||||| ||||||||||||||||||||||||||||| ||| |
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|
| T |
7191553 |
acatgttgtttaccttcgctactgttttgattataggttacttagaagacagacgtccggcttcaaacatggatccatatgtggtaacagcattattggc |
7191454 |
T |
|
| Q |
319 |
agagagaacggtattgtgggaaccaactctagaggttgaagcaccaggaatctcagaagctcgcattgaaggtctaaacctattaattaattgcatttta |
418 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| |||||| | | | |||||||||| |||||||||||||||| ||||| |||||| || || || |
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|
| T |
7191453 |
agagagtacattattgtgggaaccaactctagaggctgaagctcttgcag-ctcagaagcttgcattgaaggtctaaatctattgattaatggcgttcta |
7191355 |
T |
|
| Q |
419 |
gatggagtcagcactgttgcagtctgtgagaagttggaaaggtctttaaatttccttttagat-------------------tattaatgttgtgaagat |
499 |
Q |
| |
|
||||||||| |||||| ||||||||||||| || ||||||| ||||| | ||||||||||||| |||| || || |||| || |
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|
| T |
7191354 |
gatggagtcggcactgctgcagtctgtgaggagctggaaagctctttcactttccttttagattatttataaattatatttatatttatattatgaatat |
7191255 |
T |
|
| Q |
500 |
cttgttgtctggacaaatgaggctgccttgcctagttattgtttattagatgaatgcgcattctatatcag--atatttcgttggttgtgtttccatatg |
597 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||||||||||| |||| |||||||||| |||| |||||||| ||||||||||| |||| | |||||| |
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|
| T |
7191254 |
cttgttgtctggac-aacgaggctgacatgcctagttattggttataagatgaatgcacattgtatatcagatatatttcgttgcctgtgatagcatatg |
7191156 |
T |
|
| Q |
598 |
gtatggacagaattgcattgatgctttgcttggttatat |
636 |
Q |
| |
|
||||||||||| || ||||||||| ||| |||||||||| |
|
|
| T |
7191155 |
gtatggacagagttacattgatgc-ttgtttggttatat |
7191118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 496 - 637
Target Start/End: Complemental strand, 7184045 - 7183895
Alignment:
| Q |
496 |
agatcttgttgtctggacaaatgaggctgccttgcctagttattgtttattagatgaatgcgcat-------tctatatcag--atatttcgttggttgt |
586 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||||||| ||| | |||||||| |||||| ||| ||||| |
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|
| T |
7184045 |
agatcttgttgtctggacaaatgaggctgtcatgcctagttattggttatgagatgaatgcacatttcacactgtatatcagatatattttgttagttgt |
7183946 |
T |
|
| Q |
587 |
gtttccatatggtatggacag-aattgcattgatgctttgcttggttatata |
637 |
Q |
| |
|
| || ||||| ||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
7183945 |
gcttgaatatgatatggacagcaattgcattgatgc-ttgcttggttatata |
7183895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 280 - 353
Target Start/End: Complemental strand, 7197823 - 7197750
Alignment:
| Q |
280 |
ttcggacatggatccatatgtggtaacagcattactggaagagagaacggtattgtgggaaccaactctagagg |
353 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||| |||||| || |||||||||||| ||||||||||| |
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|
| T |
7197823 |
ttcgaacatggatccatatgtggtaacaacattattggcagagagtacattattgtgggaacaaactctagagg |
7197750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 423 - 513
Target Start/End: Complemental strand, 7197676 - 7197584
Alignment:
| Q |
423 |
gagtcagcactgttgcagtctgtgagaagt--tggaaaggtctttaaatttccttttagattattaatgttgtgaagatcttgttgtctggac |
513 |
Q |
| |
|
|||||||||||| |||| |||||||| || ||| ||| ||||| | ||||| ||||||||||| || || ||||||||||||||||||||| |
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| T |
7197676 |
gagtcagcactgctgcattctgtgaggagagctgggaagctctttcattttccatttagattatttatattatgaagatcttgttgtctggac |
7197584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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