View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_32 (Length: 359)
Name: NF17385_low_32
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 3922099 - 3921767
Alignment:
| Q |
16 |
agaacatcttcaggagattgccctccaagcaagcttttatattgtgatgacatggcatatttagattgggatattagtctttctagagttatttagtaat |
115 |
Q |
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| T |
3922099 |
agaacatcttcaggagattgccctccaagcaagcttttatactgtgatgacatggcatatttagattgggatattagtctttctagagttatttagtaat |
3922000 |
T |
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| Q |
116 |
tttacttttatttcgataaacaaatgttagtatatcagttgttatgtcagtatgtttttccttcacgaggatttgaactccaatcctttgaatatcggta |
215 |
Q |
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| T |
3921999 |
tttacttttatttcgataaacaaatgttagtatatcggttgttatgtcggtatgtttttccttcacgaggatttgaactccaatcctttgaatatcggta |
3921900 |
T |
|
| Q |
216 |
taacccttttctaaatattcttccttttcttgatttcttgannnnnnnnctccccatatatagaataagggtttgcaatttatgtttgtttatcacccta |
315 |
Q |
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| T |
3921899 |
taacccttttctaaatattcttccttttcttgatttcttga-tttttttctccccatatatagaataagggtttgcaatttatgtttgtttatcacccta |
3921801 |
T |
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| Q |
316 |
tgaagcaattaagcttaagcaagatactcctttg |
349 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3921800 |
tgaagcaattaagcttaagcaagatactcctttg |
3921767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 25 - 252
Target Start/End: Original strand, 34958522 - 34958738
Alignment:
| Q |
25 |
tcaggagattgccctccaagcaagcttttatattgtgatgacatggcatatttagattgggatattagtctttctagagttatttagtaattttactttt |
124 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||| |
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| T |
34958522 |
tcaggagattgccctccaagcaagcttttatactgtgatgacatggcatgtttagattgggatattagtctttctagtgttatttag------cattttt |
34958615 |
T |
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| Q |
125 |
atttcgataaacaaatgttagtatatcagttgttatgtcagta-tgtttttccttcacgaggatttgaactccaatcctttgaatatcggtataaccctt |
223 |
Q |
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|||| |||| | ||||||||||||||||||| ||||||| ||| | |||||| ||| || ||||||||||| |||||||||||| |||| | || |
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| T |
34958616 |
atttggatagataaatgttagtatatcagttcttatgtcggtattttttttctttcgcggggatttgaacttcaatcctttgaacatcg------tcatt |
34958709 |
T |
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| Q |
224 |
ttctaaatattcttccttttcttgatttc |
252 |
Q |
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||||||||||||||| ||||||||||||| |
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| T |
34958710 |
ttctaaatattcttctttttcttgatttc |
34958738 |
T |
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