View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_33 (Length: 355)
Name: NF17385_low_33
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 6 - 337
Target Start/End: Complemental strand, 40913252 - 40912921
Alignment:
| Q |
6 |
agaactcagaaaatagaacgatttattataggttagttcacagatcagaaacgaacctcagtagctgccccctcatcatctttatacccaattttctcca |
105 |
Q |
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| T |
40913252 |
agaactcagaaaatagaacgatctattataggttagttcacagatcagaaacgaacctcagtagctgccccctcatcatctttatacccaattttctcca |
40913153 |
T |
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| Q |
106 |
gcacctcatgtatggaagtcagatccatgcgtagacaagcttctccaagtggagtaagaggaaaagcagcactaccatcaggtatgcccatcagcacatg |
205 |
Q |
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| T |
40913152 |
gcacctcatgtatggaagtcagatccatgcgtagacaagcttctccgagtggagtaagaggaaaagcagcactaccatcaggtatgcccatcagcacatg |
40913053 |
T |
|
| Q |
206 |
agaaggaacctataaaataaaaacagtcacagcccattccagctcatcgaaatatggtctcagttctaagcatagacaaaacccagccacttgcaaatat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40913052 |
agaaggaacctataaaataaaaacagtcacagcccattccagctcatcgaaatatggtctcagttctaagcatagacaaaacccagccacttgcaaatat |
40912953 |
T |
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| Q |
306 |
aagatgattataatgacgtcgaatagaaacat |
337 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
40912952 |
aagatgattataatgacgtcgaatagaaacat |
40912921 |
T |
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