View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_35 (Length: 331)
Name: NF17385_low_35
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_35 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 14 - 331
Target Start/End: Original strand, 3758596 - 3758932
Alignment:
| Q |
14 |
caaaggcatgagatggtgaaacatctgtttcaactagatgactaacgcagttcaaatatgtggttaattacattcagtggatg----------------- |
96 |
Q |
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| T |
3758596 |
caaaggcatgagatggtgaaacgtctgtttcaactagatgattaacgcagttcaaatatgtggttaattacattcagtggatggttaatgactataacaa |
3758695 |
T |
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| Q |
97 |
--tttcgtaactcattaaacatgcactaaacaaaagtaactacgattttgaacacttggaaatcatgtatatttgaacacctgaaaatgagttcataatc |
194 |
Q |
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| T |
3758696 |
ggtttcgtaactcattaaacatgcactaaacaaaagtaactacgattttgaacacttggaaatcatgtatatttgaacacctgaaaatgagttcataatc |
3758795 |
T |
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| Q |
195 |
ttggttaaattgtgttcggaggatggtcaatgagttttaacaacttggtacattcattaaaaatatattgaagagcaatatgtcatgcttgtaccttatc |
294 |
Q |
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| T |
3758796 |
ttggttaaattgtgttcggaggatggtcaatgagttttaacaacttggtacattcattaaaaatatattgaagagcaatatgtcatgcttgtaccttatc |
3758895 |
T |
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| Q |
295 |
attcaaaagttgactggagaaatcattgttgttttca |
331 |
Q |
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| T |
3758896 |
attcaaaagttgactggagaaatcattgttgttttca |
3758932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 42813468 - 42813504
Alignment:
| Q |
63 |
gttcaaatatgtggttaattacattcagtggatgttt |
99 |
Q |
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| T |
42813468 |
gttcaaatatgtggttaattacatttagtggatgttt |
42813504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 15368130 - 15368090
Alignment:
| Q |
56 |
taacgcagttcaaatatgtggttaattacattcagtggatg |
96 |
Q |
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| T |
15368130 |
taacgctgttgaaatatgtggttaattacattcagtggatg |
15368090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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