View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_low_4 (Length: 673)

Name: NF17385_low_4
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_low_4
NF17385_low_4
[»] chr4 (8 HSPs)
chr4 (12-656)||(38237410-38238057)
chr4 (12-150)||(38242894-38243032)
chr4 (13-150)||(38226380-38226517)
chr4 (14-150)||(38220039-38220175)
chr4 (39-150)||(38214001-38214112)
chr4 (24-150)||(38253247-38253373)
chr4 (384-656)||(38213506-38213780)
chr4 (12-68)||(38248176-38248232)
[»] chr6 (2 HSPs)
chr6 (12-150)||(17454476-17454614)
chr6 (12-150)||(17433397-17433535)
[»] chr2 (5 HSPs)
chr2 (46-148)||(11473513-11473615)
chr2 (72-148)||(11485810-11485886)
chr2 (105-148)||(11479749-11479792)
chr2 (51-149)||(11463013-11463111)
chr2 (514-609)||(29356405-29356501)
[»] chr8 (2 HSPs)
chr8 (560-609)||(11319493-11319542)
chr8 (550-608)||(5455954-5456012)
[»] chr1 (2 HSPs)
chr1 (84-148)||(21547341-21547405)
chr1 (550-590)||(28026909-28026949)


Alignment Details
Target: chr4 (Bit Score: 585; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 12 - 656
Target Start/End: Complemental strand, 38238057 - 38237410
Alignment:
Q  12 agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaac 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  38238057 agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatatgatctatggtgctgctcatcaac 38237958  T
Q  112 attcaggcggaattggatcaactctatatggacaggtaacttaagtcattcttaaatgcttggtgtcggctcaatgggaatattttgacattgtgacttc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38237957 attcaggcggaattggatcaactctatatggacaggtaacttaagtcattcttaaatgcttggtgtcggctcaatgggaatattttgacattgtgacttc 38237858  T
Q  212 aagagacagagttcaaaccccctcga--acaattgtataactgatatatcattttctaataatgattcttcctctaaaaataaactataaattattaccn 309  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  38237857 aagagacagagttcaaaccccctcgagaacaattgtataactgatatatcattttctaataatgattcttcctctaaaaataaactataaattatcacct 38237758  T
Q  310 nnnnnnn-agtcttagcacgtgattgttttcaattgatagtaagaaatgtttagctaacaagaaaatagtgtgatttattggctattgaggaccgtcaat 408  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  38237757 ttttttttagtcttagcacgtgattgttttcaattgatagtaagaaatgtttagctaacaagaaaatagtttgatttattagctattgaggaccgtcaat 38237658  T
Q  409 gtttctttttgttgagtttattaacacgggtatggttcaagggctatcttgtaaacttgaccttagtatttatacacgagttgtaatatgttaaactaga 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38237657 gtttctttttgttgagtttattaacacgggtatggttcaagggctatcttgtaaacttgaccttagtatttatacacgagttgtaatatgttaaactaaa 38237558  T
Q  509 cggtagacataattgaccgaacgccattatcgaatttcgtatgttctctttttgtgtttttcatatctgtttacttttgaaccggagttgctattctaac 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38237557 cggtagacataattgaccgaacgccattatcgaatttcgtatgttctctttttgtgtttttcatatctgtttacttttgaaccggagttgctattctaac 38237458  T
Q  609 aattttacttttgatcaagaagttaaacattgtgtagtggcttgtttt 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38237457 aattttacttttgatcaagaagttaaacattgtgtagtggcttgtttt 38237410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 38243032 - 38242894
Alignment:
Q  12 agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaac 111  Q
    ||||||||||||| ||||| ||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||| |    
T  38243032 agcacagaccatagggaggaaaatgggtgtgttcatgtgaagaggacaagtctcccatttcaaactggtggatatgtgatctatggtgttgcacatcagc 38242933  T
Q  112 attcaggcggaattggatcaactctatatggacaggtaa 150  Q
    ||||||| ||||||||||| || ||||||||||||||||    
T  38242932 attcaggtggaattggatccaccctatatggacaggtaa 38242894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 38226517 - 38226380
Alignment:
Q  13 gcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaaca 112  Q
    ||||||||||||| ||  |||||   |||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||| ||    
T  38226517 gcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccactacaaactggtggctatgtgatctatggtgttgctcatcagca 38226418  T
Q  113 ttcaggcggaattggatcaactctatatggacaggtaa 150  Q
    |||||| |||||||||||||||||||| || |||||||    
T  38226417 ttcaggtggaattggatcaactctatacgggcaggtaa 38226380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 38220175 - 38220039
Alignment:
Q  14 cacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaacat 113  Q
    |||| |||||||||| ||||||   ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||    
T  38220175 cacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagtctcccatttcaaactggtggttatgtgatctatggtgttgcacatcaacat 38220076  T
Q  114 tcaggcggaattggatcaactctatatggacaggtaa 150  Q
    || || ||||| ||||| || ||||||||||||||||    
T  38220075 tcgggtggaatcggatccaccctatatggacaggtaa 38220039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 39 - 150
Target Start/End: Complemental strand, 38214112 - 38214001
Alignment:
Q  39 tgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctat 138  Q
    ||||||||||||| |||||||||||||||| | |||||||||||||||||  |||||| || ||||||||| ||||||||||||||||||||||||||||    
T  38214112 tgtgttcatgtgatgaggacaagtctcccactacaaactggtggctatgttgtctatgctgttgctcatcagcattcaggcggaattggatcaactctat 38214013  T
Q  139 atggacaggtaa 150  Q
    ||||||||||||    
T  38214012 atggacaggtaa 38214001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 24 - 150
Target Start/End: Complemental strand, 38253373 - 38253247
Alignment:
Q  24 aaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaa 123  Q
    ||||||||||||   ||||||||||| || ||||||||||||||| | ||||| |||||||||||||||||||||| ||||||||| |||||||| ||||    
T  38253373 aaggagggaaatgggtgtgttcatgtaaaaaggacaagtctcccactacaaaccggtggctatgtgatctatggtgttgctcatcagcattcaggtggaa 38253274  T
Q  124 ttggatcaactctatatggacaggtaa 150  Q
    |||||||||| |||| |||||||||||    
T  38253273 ttggatcaaccctatttggacaggtaa 38253247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 384 - 656
Target Start/End: Complemental strand, 38213780 - 38213506
Alignment:
Q  384 ttattggctattgaggaccgtcaatgtttctttttgttgagtttattaacacgggtat--ggttcaagggctatcttgtaaacttgaccttagtatttat 481  Q
    |||||||| | |||||||  || |||||  ||||||||||||| ||| ||||||||||  |||||| |||  ||||| | |||   ||  ||| |||||     
T  38213780 ttattggcaactgaggactatctatgttcttttttgttgagttgattgacacgggtatatggttcaggggtaatcttatcaaccaaactgtagcatttaa 38213681  T
Q  482 acacgagttgtaatatgttaaactagacggtagacataattgaccgaacgccattatcgaatttcgtatgttctctttttgtgtttttcatatctgttta 581  Q
    |||  ||||||||||| ||||||||||| ||||||| ||||| ||||||||||| ||| ||| |||  |||| ||| ||||  |||||   |||||||||    
T  38213680 acagaagttgtaatatattaaactagacagtagacacaattggccgaacgccatgatcaaatctcgagtgttttctgtttgcattttttgcatctgttta 38213581  T
Q  582 cttttgaaccggagttgctattctaacaattttacttttgatcaagaagttaaacattgtgtagtggcttgtttt 656  Q
    |||||| |   | ||||||  ||||||  || || |||||||||| |||||||||||||||||||||||||||||    
T  38213580 cttttgtattagggttgctgctctaacgcttctagttttgatcaataagttaaacattgtgtagtggcttgtttt 38213506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 68
Target Start/End: Complemental strand, 38248232 - 38248176
Alignment:
Q  12 agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctccca 68  Q
    |||||||| ||  |||||||||||   |||||||||||||| |||||||||||||||    
T  38248232 agcacagatcaataggagggaaatgggtgtgttcatgtgaaaaggacaagtctccca 38248176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 17454614 - 17454476
Alignment:
Q  12 agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaac 111  Q
    |||||||||||| |||||||||||   |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| || |||||||||||    
T  17454614 agcacagaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccactgcaaactggtggctatgtgatctatgctgttgctcatcaac 17454515  T
Q  112 attcaggcggaattggatcaactctatatggacaggtaa 150  Q
    ||||||| ||| ||||||||||| |||||||||||||||    
T  17454514 attcagggggagttggatcaactttatatggacaggtaa 17454476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 17433535 - 17433397
Alignment:
Q  12 agcacagaccataaggagggaaattcctgtgttcatgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaac 111  Q
    |||| ||||||| |||||| ||||   |||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| || |||||||||||    
T  17433535 agcagagaccatgaggaggaaaatggttgtgttcatgtgaagaggacaagtctcccactacaaactggtggatatgtgatctatgctgttgctcatcaac 17433436  T
Q  112 attcaggcggaattggatcaactctatatggacaggtaa 150  Q
    ||||||| |||| ||||||||||||||| ||||||||||    
T  17433435 attcaggtggaactggatcaactctatacggacaggtaa 17433397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 148
Target Start/End: Original strand, 11473513 - 11473615
Alignment:
Q  46 atgtgaagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggaca 145  Q
    |||| ||||| |||||  ||||| | |||| |||||| ||| | |||||||| | || ||||||||||||||| | |||||||||||||||||||||| |    
T  11473513 atgtcaagagaacaagcttcccaatgcaaaatggtggttatctcatctatggagttggtcatcaacattcaggtgcaattggatcaactctatatggaaa 11473612  T
Q  146 ggt 148  Q
    |||    
T  11473613 ggt 11473615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 11485810 - 11485886
Alignment:
Q  72 caaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggt 148  Q
    |||| |||||| ||||| |||||||| | || |||||| |||||||| | |||||||||||||||||||||| ||||    
T  11485810 caaaatggtggttatgtcatctatggagttggtcatcagcattcaggtgcaattggatcaactctatatggaaaggt 11485886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 148
Target Start/End: Original strand, 11479749 - 11479792
Alignment:
Q  105 catcaacattcaggcggaattggatcaactctatatggacaggt 148  Q
    ||||| |||||||| | |||||||||||||||||||||||||||    
T  11479749 catcagcattcaggtgcaattggatcaactctatatggacaggt 11479792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 11463013 - 11463111
Alignment:
Q  51 aagaggacaagtctcccatttcaaactggtggctatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggta 149  Q
    ||||| |||||| ||||| |  |||||||||| ||| | |||||  |||||| ||||||||||  ||| |  ||| |||||||||||||||||||||||    
T  11463013 aagagaacaagtgtcccaataaaaactggtggttatataatctacagtgctggtcatcaacatgtaggtgcgattagatcaactctatatggacaggta 11463111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 514 - 609
Target Start/End: Original strand, 29356405 - 29356501
Alignment:
Q  514 gacataattgaccgaacgccattatcgaatttcgtatgttctctttttgtgtttttcatatctgtttacttt-tgaaccggagttgctattctaaca 609  Q
    |||| |||||||||||  | |||||| |||||| | |||| ||| ||||||||||  |||||| |||||||| |||||  |||||| ||||||||||    
T  29356405 gacacaattgaccgaaatctattatcaaatttcctgtgttttctgtttgtgttttatatatctctttactttgtgaactagagttgttattctaaca 29356501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 609
Target Start/End: Original strand, 11319493 - 11319542
Alignment:
Q  560 ttgtgtttttcatatctgtttacttttgaaccggagttgctattctaaca 609  Q
    ||||||||||| |||||||||||||||||||  | |||||||||||||||    
T  11319493 ttgtgtttttcgtatctgtttacttttgaactagggttgctattctaaca 11319542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 550 - 608
Target Start/End: Original strand, 5455954 - 5456012
Alignment:
Q  550 tgttctctttttgtgtttttcatatctgtttacttttgaaccggagttgctattctaac 608  Q
    |||||||| |||||||||||||||||||||| |||| |||||  ||||| | |||||||    
T  5455954 tgttctctgtttgtgtttttcatatctgttttctttagaaccaaagttgttgttctaac 5456012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 21547341 - 21547405
Alignment:
Q  84 tatgtgatctatggtgctgctcatcaacattcaggcggaattggatcaactctatatggacaggt 148  Q
    ||||| |||||||| | || ||||| |||  |||| | |||||||||||||||||||||||||||    
T  21547341 tatgtcatctatggagttggtcatctacacacaggtgcaattggatcaactctatatggacaggt 21547405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 550 - 590
Target Start/End: Complemental strand, 28026949 - 28026909
Alignment:
Q  550 tgttctctttttgtgtttttcatatctgtttacttttgaac 590  Q
    |||||||| |||||||||||| ||||| |||||||||||||    
T  28026949 tgttctctatttgtgtttttcgtatctttttacttttgaac 28026909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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