View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_40 (Length: 298)
Name: NF17385_low_40
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 59 - 248
Target Start/End: Complemental strand, 32696180 - 32695991
Alignment:
| Q |
59 |
ttaaaattattctctccactatttcattcatgtttattaatagccaagctaagaagcctagtaaatttatctttcaacagtttctcatctaaccacggtt |
158 |
Q |
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| T |
32696180 |
ttaaaattattctctctagtatttcattcatgtttattaatagccaagctaagaagcctaataaatttatctttcaacagtttctcatctaaccacggtt |
32696081 |
T |
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| Q |
159 |
caaaccaaaataagacatttccaccatttccgaccatattcaaaaggtaattggagaacaaactatcaaaacgagtgctcacacctctct |
248 |
Q |
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| T |
32696080 |
caaaccaaaataagacaattccaccatttccgaccatattcaaaaggtaattggagaacaaactatcaaaacgagtgctcacacctctct |
32695991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 67
Target Start/End: Complemental strand, 32696396 - 32696365
Alignment:
| Q |
36 |
acctccatcaggctcactcaactttaaaatta |
67 |
Q |
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| T |
32696396 |
acctccatcaggctcactcaactttaaaatta |
32696365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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