View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_43 (Length: 274)
Name: NF17385_low_43
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 43881901 - 43882158
Alignment:
| Q |
1 |
cagtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacaaatggatgactataaaactgag |
100 |
Q |
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| T |
43881901 |
cagtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacaaatggatgaccataaaactgag |
43882000 |
T |
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| Q |
101 |
tatctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaacaaggagtctc |
200 |
Q |
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| T |
43882001 |
tatttccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaacaaggagtctc |
43882100 |
T |
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| Q |
201 |
ggcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatc |
258 |
Q |
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| T |
43882101 |
ggcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatc |
43882158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 43881678 - 43881933
Alignment:
| Q |
3 |
gtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacaaatggatgactataaaactgagta |
102 |
Q |
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| T |
43881678 |
gtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacaaatggatgaccataaaactgagta |
43881777 |
T |
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| Q |
103 |
tctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaacaaggagtctcgg |
202 |
Q |
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| T |
43881778 |
tctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaacaaggagtctcgg |
43881877 |
T |
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| Q |
203 |
cttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatc |
258 |
Q |
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| T |
43881878 |
cttaaatcactgaacaagtccgtcagtggtatttctaagcaaattcaaaaagtatc |
43881933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 43882127 - 43882383
Alignment:
| Q |
2 |
agtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacaaatggatgactataaaactgagt |
101 |
Q |
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| T |
43882127 |
agtggtatttctaagcacattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacgaatggatgaccataaaactgagt |
43882226 |
T |
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| Q |
102 |
atctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaacaaggagtctcg |
201 |
Q |
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| T |
43882227 |
ttctccgttcgcctgaaaaagctaggcaagtaactcgaggagtctcggctacagattttcaacaaaaatcaagtgatttttctgacaacaaggagtctcg |
43882326 |
T |
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| Q |
202 |
gcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatc |
258 |
Q |
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| T |
43882327 |
gcttaaatcattgaacaagtccgtcagtggtatttctaagcaaattcaaaaagtatc |
43882383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 43882351 - 43882542
Alignment:
| Q |
1 |
cagtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgatatcaaacaacaaatggatgactataaaactgag |
100 |
Q |
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| T |
43882351 |
cagtggtatttctaagcaaattcaaaaagtatcaagtggaagttttaagcaccttgttgaaggtgataccaaacaacgaatggatgaccataaaactgag |
43882450 |
T |
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| Q |
101 |
tatctccgttcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacagattttcaacaaaaatcaagtgatttttctgacaacaa |
192 |
Q |
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| T |
43882451 |
tttctccattcgcctgaaaaggctaggcgagtaactcaaggagtctcagctacatattttcaacaaagatcaagtgatttttctgacaacaa |
43882542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 43881651 - 43881708
Alignment:
| Q |
201 |
ggcttaaatcactgaacaagtccgttagtggtatttctaagcacattcaaaaagtatc |
258 |
Q |
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||||||||||||||||| ||| || |||||||||||||||| |||||||||||||| |
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| T |
43881651 |
ggcttaaatcactgaacgcatccattggtggtatttctaagcaaattcaaaaagtatc |
43881708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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