View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_low_53 (Length: 247)

Name: NF17385_low_53
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_low_53
NF17385_low_53
[»] chr7 (8 HSPs)
chr7 (1-243)||(23114149-23114390)
chr7 (106-207)||(28300731-28300832)
chr7 (142-232)||(19848469-19848559)
chr7 (94-159)||(12634055-12634121)
chr7 (103-164)||(23416573-23416634)
chr7 (112-228)||(23416315-23416431)
chr7 (52-84)||(47726911-47726943)
chr7 (100-150)||(47726716-47726766)
[»] chr3 (4 HSPs)
chr3 (106-207)||(2144552-2144653)
chr3 (112-205)||(42028646-42028739)
chr3 (94-228)||(44714006-44714141)
chr3 (103-157)||(27011880-27011934)
[»] chr4 (5 HSPs)
chr4 (112-228)||(46142620-46142736)
chr4 (142-232)||(41222949-41223039)
chr4 (143-204)||(26829400-26829461)
chr4 (112-220)||(50859416-50859524)
chr4 (143-204)||(34494463-34494524)
[»] chr6 (2 HSPs)
chr6 (106-207)||(10144771-10144872)
chr6 (181-229)||(7364383-7364431)
[»] chr2 (6 HSPs)
chr2 (112-205)||(28219699-28219792)
chr2 (106-159)||(12432864-12432917)
chr2 (133-226)||(17998985-17999078)
chr2 (143-243)||(8856066-8856166)
chr2 (183-247)||(20713620-20713684)
chr2 (103-159)||(23701642-23701698)
[»] chr1 (7 HSPs)
chr1 (106-207)||(29465473-29465574)
chr1 (103-243)||(35306186-35306327)
chr1 (133-205)||(34970838-34970910)
chr1 (181-232)||(32573778-32573829)
chr1 (92-224)||(15582247-15582380)
chr1 (145-205)||(29451691-29451751)
chr1 (183-247)||(30180401-30180465)
[»] scaffold0039 (1 HSPs)
scaffold0039 (142-244)||(57670-57772)
[»] chr8 (3 HSPs)
chr8 (106-242)||(20307732-20307868)
chr8 (106-242)||(21094365-21094501)
chr8 (183-247)||(22527320-22527384)
[»] chr5 (4 HSPs)
chr5 (118-243)||(21521457-21521582)
chr5 (118-243)||(21532023-21532148)
chr5 (183-232)||(13172532-13172581)
chr5 (118-207)||(41484266-41484355)
[»] scaffold0022 (2 HSPs)
scaffold0022 (112-207)||(43494-43589)
scaffold0022 (112-207)||(77214-77309)
[»] scaffold0110 (1 HSPs)
scaffold0110 (103-157)||(37940-37994)
[»] scaffold0075 (1 HSPs)
scaffold0075 (106-159)||(12157-12210)
[»] scaffold0097 (1 HSPs)
scaffold0097 (183-247)||(17459-17523)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23114149 - 23114390
Alignment:
Q  1 cattactgtactcacctatgtttatccctgggtttcaatatacatcaatgcaaataaaaaatgtcatatttatatgattaaaatttactctaaaaagagt 100  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23114149 cattactgtacttacctatgtttatccctgggtttgaatatacatcaatgcaaataaaaaatgtcatatttatatgattaaaatttactctaaaaagggt 23114248  T
Q  101 agaattggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23114249 agaattggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccat-aaataaccaaacaatg 23114347  T
Q  201 gaatggagtcattattccattccactccgttctactccattcc 243  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  23114348 gaatggagtcattattccattccgctccgttctactccattcc 23114390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 28300832 - 28300731
Alignment:
Q  106 tggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatg 205  Q
    ||||||||||| |||||||| ||| |||||||||  ||||||||||||||||||   ||||   |||||||||  ||||||||| ||||||| |||||||    
T  28300832 tggaataaaaagttataatttattccattccgtcaactttccaaacaatggaatggaaaatgcattccgctccatcataaaatacccaaacagtggaatg 28300733  T
Q  206 ga 207  Q
    ||    
T  28300732 ga 28300731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 19848469 - 19848559
Alignment:
Q  142 ctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtcattattccattccactccgttc 232  Q
    ||||||||||||||||||   ||| | |||||| |||  |||||| || ||||||||||||||||| || ||||||||||||| |||||||    
T  19848469 ctttccaaacaatggaatggaaaactagttccgttccatcataaagtatccaaacaatggaatggaatctttattccattccattccgttc 19848559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 12634055 - 12634121
Alignment:
Q  94 aaagagtagaattggaataaaaat-ttataattcatttcattccgtccgctttccaaacaatggaat 159  Q
    |||| ||| ||||||||||||||| |||||||||||| | |||||||  ||||||||||||||||||    
T  12634055 aaagggtataattggaataaaaatgttataattcattccgttccgtcgactttccaaacaatggaat 12634121  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 164
Target Start/End: Complemental strand, 23416634 - 23416573
Alignment:
Q  103 aattggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaattataa 164  Q
    |||||||||||||| ||||||| |||| |||||||||  ||| |||||||||||| ||||||    
T  23416634 aattggaataaaaaattataatacattccattccgtcaacttcccaaacaatggagttataa 23416573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 228
Target Start/End: Complemental strand, 23416431 - 23416315
Alignment:
Q  112 aaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtca 211  Q
    ||||||||||||  |||| |||||||| |  ||||||||||||||||| |  |||| ||||||||||    || |||| |||||||||||||| || |      
T  23416431 aaaaatttataacacattccattccgttcattttccaaacaatggaataagtaatttgttccgctccattgtataatacccaaacaatggaatagaatat 23416332  T
Q  212 ttattccattccactcc 228  Q
    |||||||||||| ||||    
T  23416331 ttattccattccgctcc 23416315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 47726943 - 47726911
Alignment:
Q  52 aaataaaaaatgtcatatttatatgattaaaat 84  Q
    |||||||||||||||||||||||||||||||||    
T  47726943 aaataaaaaatgtcatatttatatgattaaaat 47726911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 47726766 - 47726716
Alignment:
Q  100 tagaattggaataaaaatttataattcatttcattccgtccgctttccaaa 150  Q
    ||||||||||||||||| ||||||||||||| |||||| ||  ||||||||    
T  47726766 tagaattggaataaaaagttataattcattttattccgcccattttccaaa 47726716  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 2144653 - 2144552
Alignment:
Q  106 tggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatg 205  Q
    ||||||||||| |||||||| ||| |||||||||  ||||||||||||||||||   ||||   |||||||||  ||||||||| ||||||| |||||||    
T  2144653 tggaataaaaagttataatttattccattccgtcaactttccaaacaatggaatggaaaatgcattccgctccatcataaaatacccaaacagtggaatg 2144554  T
Q  206 ga 207  Q
    ||    
T  2144553 ga 2144552  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 42028739 - 42028646
Alignment:
Q  112 aaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatg 205  Q
    ||||| |||||| | |||||||||||||| |||||||||||||||| |   ||||| |||||  |||||| || |||| |||||||||||||||    
T  42028739 aaaaagttataactaatttcattccgtccactttccaaacaatggagtgggaaattagttccattccgccgtataatatccaaacaatggaatg 42028646  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 44714006 - 44714141
Alignment:
Q  94 aaagagtagaattggaataaaaat-ttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataacc 192  Q
    |||| ||| ||||||||||||||  |||||||||||| | |||||| |  || ||||||||| |||| | ||||| |||||  |||  | ||||||| ||    
T  44714006 aaagggtaaaattggaataaaaaaattataattcattccgttccgttcatttgccaaacaatagaatgaaaaattagttccattccatcgtaaaatatcc 44714105  T
Q  193 aaacaatggaatggagtcattattccattccactcc 228  Q
    ||||||| ||||| | || |||||||||||| ||||    
T  44714106 aaacaattgaatgaaatctttattccattccgctcc 44714141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Original strand, 27011880 - 27011934
Alignment:
Q  103 aattggaataaaaatttataattcatttcattccgtccgctttccaaacaatgga 157  Q
    |||||||||||||| ||||||| |||| |||| ||||  ||||||||||||||||    
T  27011880 aattggaataaaaaattataatacattccatttcgtcaactttccaaacaatgga 27011934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 46142620 - 46142736
Alignment:
Q  112 aaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtca 211  Q
    ||||| |||||||||||| |||| ||| | |||||||||||||||||| | || ||  |||||||||| | | ||||| ||||||||||||||||| ||     
T  46142620 aaaaagttataattcattccatttcgttctctttccaaacaatggaatgaaaattttattccgctccgtcgtgaaatatccaaacaatggaatggaatct 46142719  T
Q  212 ttattccattccactcc 228  Q
     | ||||||||| ||||    
T  46142720 ctcttccattccgctcc 46142736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 41223039 - 41222949
Alignment:
Q  142 ctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtcattattccattccactccgttc 232  Q
    ||||||||||||||||||   ||| | |||||| |||  |||||| || ||||||||||||||||| || ||||||||||||  |||||||    
T  41223039 ctttccaaacaatggaatggaaaactagttccgttccatcataaagtatccaaacaatggaatggaatctttattccattccgttccgttc 41222949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 204
Target Start/End: Original strand, 26829400 - 26829461
Alignment:
Q  143 tttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaat 204  Q
    ||||||||||||||||   |||||| ||||||||||  ||||||||| ||||||||||||||    
T  26829400 tttccaaacaatggaaaggtaaatttgttccgctccatcataaaatacccaaacaatggaat 26829461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 220
Target Start/End: Original strand, 50859416 - 50859524
Alignment:
Q  112 aaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtca 211  Q
    ||||| |||||| ||||| |||||||||| ||||||||| |||||| |   ||||| ||| |  |||| || |||||| ||||||||||||||| | ||     
T  50859416 aaaaagttataactcattccattccgtccactttccaaataatggagtgggaaattagtttcattccgtcaaaaaatatccaaacaatggaatgtaatct 50859515  T
Q  212 ttattccat 220  Q
    |||||||||    
T  50859516 ttattccat 50859524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 143 - 204
Target Start/End: Complemental strand, 34494524 - 34494463
Alignment:
Q  143 tttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaat 204  Q
    ||||||||||||||||   |||||| ||||||||||  |||||||||  |||||||||||||    
T  34494524 tttccaaacaatggaaaggtaaatttgttccgctccatcataaaatactcaaacaatggaat 34494463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 207
Target Start/End: Original strand, 10144771 - 10144872
Alignment:
Q  106 tggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatg 205  Q
    ||||||||||| |||||||| ||| |||||||||  ||||||||| ||||||||   ||||   |||||||||  ||||||||| ||||||| |||||||    
T  10144771 tggaataaaaagttataatttattccattccgtcaactttccaaataatggaatggaaaatgcattccgctccatcataaaatacccaaacagtggaatg 10144870  T
Q  206 ga 207  Q
    ||    
T  10144871 ga 10144872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 7364431 - 7364383
Alignment:
Q  181 cataaaataaccaaacaatggaatggagtcattattccattccactccg 229  Q
    ||||| ||| ||||||||||||||||| || ||||||||||||| ||||    
T  7364431 cataacatatccaaacaatggaatggaatctttattccattccattccg 7364383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 28219699 - 28219792
Alignment:
Q  112 aaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatg 205  Q
    ||||| |||||| | |||||||||||||| |||||||||||||||| |   ||||| |||||  |||||| || |||| |||||||||||||||    
T  28219699 aaaaagttataactaatttcattccgtccactttccaaacaatggagtgggaaattagttccattccgccgtataatatccaaacaatggaatg 28219792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 12432917 - 12432864
Alignment:
Q  106 tggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaat 159  Q
    ||||||||||| |||||||| ||| |||||||||  ||||||||||||||||||    
T  12432917 tggaataaaaagttataatttattccattccgtcaactttccaaacaatggaat 12432864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 17999078 - 17998985
Alignment:
Q  133 ttccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtcattattccattccact 226  Q
    |||||||| |||| |||||||||||||   ||||| |||||  |||| ||||||||| ||||||||| ||||| | |  |||||||||||||||    
T  17999078 ttccgtccacttttcaaacaatggaatgggaaattagttccattccgtcataaaatatccaaacaatagaatgtaatttttattccattccact 17998985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 243
Target Start/End: Original strand, 8856066 - 8856166
Alignment:
Q  143 tttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtcattattccattccactccgttctactccattc 242  Q
    ||||||||||||||||  |  |||| ||||||||||| |||| |||| ||||||||| |||| || |  ||||||||||||  |||||||  ||||||||    
T  8856066 tttccaaacaatggaacaagtaatttgttccgctccgtcatataatacccaaacaatagaatagaatatttattccattccgttccgttccgctccattc 8856165  T
Q  243 c 243  Q
    |    
T  8856166 c 8856166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 20713684 - 20713620
Alignment:
Q  183 taaaataaccaaacaatggaatggagtcattattccattccactccgttctactccattccgctc 247  Q
    ||||||| ||||||||||||||| | ||  |||||||||||  ||||||| | ||||||||||||    
T  20713684 taaaatatccaaacaatggaatgaaatccatattccattccgttccgttccattccattccgctc 20713620  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 23701642 - 23701698
Alignment:
Q  103 aattggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaat 159  Q
    |||||||||||||| |||||| ||||| |||| | ||  ||||||||||||||||||    
T  23701642 aattggaataaaaagttataactcattccatttcatcaactttccaaacaatggaat 23701698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 207
Target Start/End: Complemental strand, 29465574 - 29465473
Alignment:
Q  106 tggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatg 205  Q
    ||||||||||| |||||||| ||| |||| ||||  ||||||||||||||||||   ||||   |||||||||  ||||||||| ||||||| |||||||    
T  29465574 tggaataaaaagttataatttattccatttcgtcaactttccaaacaatggaatggaaaatgcattccgctccatcataaaatacccaaacagtggaatg 29465475  T
Q  206 ga 207  Q
    ||    
T  29465474 ga 29465473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 35306327 - 35306186
Alignment:
Q  103 aattggaataaaaat-ttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatgg 201  Q
    ||||||||||||||  |||||| ||||| |||||||||   ||||||||||||||||| | || |   |||||||||  ||||| ||| |||||||| ||    
T  35306327 aattggaataaaaaaattataactcattccattccgtcaattttccaaacaatggaatgagaattctattccgctccatcataatatacccaaacaaagg 35306228  T
Q  202 aatggagtcattattccattccactccgttctactccattcc 243  Q
    | |||| ||  |||||||||||  |||| || ||||||||||    
T  35306227 agtggactctctattccattccgttccgctccactccattcc 35306186  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 34970838 - 34970910
Alignment:
Q  133 ttccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatg 205  Q
    |||||||| |||||||||||||||| |   ||||| |||||  |||| ||||||||| |||||||||||||||    
T  34970838 ttccgtccactttccaaacaatggagtgggaaattagttccattccgtcataaaatatccaaacaatggaatg 34970910  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 32573778 - 32573829
Alignment:
Q  181 cataaaataaccaaacaatggaatggagtcattattccattccactccgttc 232  Q
    |||||| || ||||||||||||||||| || ||||||||||||| |||||||    
T  32573778 cataaagtatccaaacaatggaatggaatctttattccattccattccgttc 32573829  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 224
Target Start/End: Original strand, 15582247 - 15582380
Alignment:
Q  92 aaaaagagtagaattggaataaaaattt-ataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataa 190  Q
    |||||| ||| ||||||||||||| ||| |||| || ||   |||||||  ||||||||||||||||||   ||||| |||||  |||  |||||| ||     
T  15582247 aaaaagggtaaaattggaataaaatttttataactctttctgttccgtcaactttccaaacaatggaatggaaaattagttccattccatcataaagtat 15582346  T
Q  191 ccaaacaatggaatggagtcattattccattcca 224  Q
    ||||||||||||||||| |  ||||||| |||||    
T  15582347 ccaaacaatggaatggaatttttattccgttcca 15582380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 29451691 - 29451751
Alignment:
Q  145 tccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatg 205  Q
    |||||| |||||||| ||||||| ||||||||    ||||||||| |||||||||||||||    
T  29451691 tccaaataatggaatgataaatttgttccgctgaatcataaaatatccaaacaatggaatg 29451751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 30180465 - 30180401
Alignment:
Q  183 taaaataaccaaacaatggaatggagtcattattccattccactccgttctactccattccgctc 247  Q
    ||||||| ||||||||||||||| | ||  |||||||||||  ||||||| | ||||||||||||    
T  30180465 taaaatatccaaacaatggaatgaaatccatattccattccgttccgttccattccattccgctc 30180401  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 244
Target Start/End: Original strand, 57670 - 57772
Alignment:
Q  142 ctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtcattattccattccactccgttctactccatt 241  Q
    ||||||||||||||||||   ||| | |||||| |||  |||||| || ||||||||||||||| | || ||||||||||| | ||||||| | ||||||    
T  57670 ctttccaaacaatggaatggaaaactagttccgttccatcataaagtatccaaacaatggaatgaaatctttattccattcaattccgttccattccatt 57769  T
Q  242 ccg 244  Q
    |||    
T  57770 ccg 57772  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 20307732 - 20307868
Alignment:
Q  106 tggaataaaaat-ttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaat 204  Q
    |||||||||||| |||||||| ||| |||||||||  ||||||||||| ||||||   | |||  || ||||||  ||||||||| ||||||| ||||||    
T  20307732 tggaataaaaatgttataatttattccattccgtcaactttccaaacattggaatggaagatttatttcgctccatcataaaatacccaaacagtggaat 20307831  T
Q  205 ggagtcattattccattccactccgttctactccattc 242  Q
    ||| ||  | |||||||||| |||||||  ||||||||    
T  20307832 ggactctatgttccattcca-tccgttccgctccattc 20307868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 242
Target Start/End: Original strand, 21094365 - 21094501
Alignment:
Q  106 tggaataaaaat-ttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaat 204  Q
    |||||||||||| |||||||| ||| |||||||||  ||||||||||| ||||||   | |||  || ||||||  ||||||||| ||||||| ||||||    
T  21094365 tggaataaaaatgttataatttattccattccgtcaactttccaaacattggaatggaagatttatttcgctccatcataaaatacccaaacagtggaat 21094464  T
Q  205 ggagtcattattccattccactccgttctactccattc 242  Q
    ||| ||  | |||||||||| |||||||  ||||||||    
T  21094465 ggactctatgttccattcca-tccgttccgctccattc 21094501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 22527384 - 22527320
Alignment:
Q  183 taaaataaccaaacaatggaatggagtcattattccattccactccgttctactccattccgctc 247  Q
    ||||||| ||||||||||||||||| ||  |||||||||||  ||||||| | ||||||||||||    
T  22527384 taaaatatccaaacaatggaatggaatccatattccattccgttccgttccattccattccgctc 22527320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 21521457 - 21521582
Alignment:
Q  118 ttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtcattattc 217  Q
    |||||||||||| |||||||| | |||| ||||||||||||| |  |||| |||||  |||  | || |||| ||||||||||||||| | |  ||||||    
T  21521457 ttataattcattccattccgttcacttttcaaacaatggaataagtaatttgttccattccatcgtataatatccaaacaatggaatgaaatatttattc 21521556  T
Q  218 cattccactccgttctactccattcc 243  Q
    ||||||  |||||||  |||||||||    
T  21521557 cattccgttccgttccgctccattcc 21521582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 21532023 - 21532148
Alignment:
Q  118 ttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatggagtcattattc 217  Q
    |||||||||||| |||||||| | |||| ||||||||||||| |  |||| |||||  |||  | || |||| ||||||||||||||| | |  ||||||    
T  21532023 ttataattcattccattccgttcacttttcaaacaatggaataagtaatttgttccattccatcgtataatatccaaacaatggaatgaaatatttattc 21532122  T
Q  218 cattccactccgttctactccattcc 243  Q
    ||||||  |||||||  |||||||||    
T  21532123 cattccgttccgttccgctccattcc 21532148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 232
Target Start/End: Complemental strand, 13172581 - 13172532
Alignment:
Q  183 taaaataaccaaacaatggaatggagtcattattccattccactccgttc 232  Q
    ||||||| ||||||||||||||||| ||  |||||||||||| |||||||    
T  13172581 taaaatatccaaacaatggaatggaatccatattccattccattccgttc 13172532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 41484266 - 41484355
Alignment:
Q  118 ttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatgga 207  Q
    |||||||||||| | |||||| | ||||| |||||||||||| |  |||| |||||| |||  | ||||||| |||||||||| ||||||    
T  41484266 ttataattcattccgttccgttcactttctaaacaatggaatgaataatttgttccgttccatcgtaaaatatccaaacaatgaaatgga 41484355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 43589 - 43494
Alignment:
Q  112 aaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatgga 207  Q
    ||||| |||||| ||||| | ||| |||  |||||||||||||||||| | ||||| ||| |  |||| | ||||||| |||||||||||||||||    
T  43589 aaaaagttataactcattccgttctgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatggaatgga 43494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 207
Target Start/End: Complemental strand, 77309 - 77214
Alignment:
Q  112 aaaaatttataattcatttcattccgtccgctttccaaacaatggaattataaattggttccgctccgccataaaataaccaaacaatggaatgga 207  Q
    ||||| |||||| ||||| | ||| |||  |||||||||||||||||| | ||||| ||| |  |||| | ||||||| |||||||||||||||||    
T  77309 aaaaagttataactcattccgttctgtctactttccaaacaatggaatgagaaattagtttcattccgtcgtaaaatatccaaacaatggaatgga 77214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 37994 - 37940
Alignment:
Q  103 aattggaataaaaatttataattcatttcattccgtccgctttccaaacaatgga 157  Q
    ||||| |||||||| ||||||| |||| |||||||||  ||||||||||||||||    
T  37994 aattgaaataaaaaattataatacattccattccgtcatctttccaaacaatgga 37940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 12210 - 12157
Alignment:
Q  106 tggaataaaaatttataattcatttcattccgtccgctttccaaacaatggaat 159  Q
    ||||||||||| |||||||| ||| |||||||||  ||||||||| ||||||||    
T  12210 tggaataaaaagttataatttattccattccgtcaactttccaaataatggaat 12157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 247
Target Start/End: Complemental strand, 17523 - 17459
Alignment:
Q  183 taaaataaccaaacaatggaatggagtcattattccattccactccgttctactccattccgctc 247  Q
    ||||||| ||||||||||||||| | ||  |||||||||||  ||||||| | ||||||||||||    
T  17523 taaaatatccaaacaatggaatgtaatccatattccattccgttccgttccattccattccgctc 17459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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