View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_54 (Length: 247)
Name: NF17385_low_54
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 39 - 220
Target Start/End: Original strand, 30419274 - 30419454
Alignment:
| Q |
39 |
ttattaagcttttttgaaatatacacctctcgcactctcccgaatttagaaagnnnnnnnnnccctcaaagatccaccacgctatcaccatctgggaagt |
138 |
Q |
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| T |
30419274 |
ttatcaagcttttttgaaatatacacctctcgcactctcctgaatttagaaagaaaaaaaa-ccctcaaagatccaccactctatcaccatctgagaagt |
30419372 |
T |
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| Q |
139 |
ttgtgaagaaaaataatgtggtaatatgagaaagatgattgatgtaacctatcatcgtcccctaacctccgctttgtgtgaa |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
30419373 |
ttgtgaagaaaaataatgtggtaatatgagaaagatgattgatgtaacctatcaccgtcccctaacctccgctttgtgtgaa |
30419454 |
T |
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