View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_56 (Length: 238)
Name: NF17385_low_56
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 13512189 - 13512398
Alignment:
| Q |
13 |
aatatcatactcattgttctattttctaattaccatctcagaatagatttaaaatgtaagacaagaaaagtacagatgtctcgtaacttgtaagtgcaag |
112 |
Q |
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| T |
13512189 |
aatatcatactcattgttctattttctaattaccatctcagaacagatttaaaatgtaagacaagaaaagtacagatgtctcgtaacttgtaagtgcaag |
13512288 |
T |
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| Q |
113 |
cgagatggtaagaagactgcaaaatattctg-ttttttcaggaggatgggagtttgaatccacaatatcactcttcaaagcaaaatacttccctagtagt |
211 |
Q |
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| T |
13512289 |
cgagatggtaagaagactgcgaaatattctgtttttttcaggaggatgggagtttgaatccacaatatcactcttcaaagcaaaatacttccctagtagt |
13512388 |
T |
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| Q |
212 |
gacttccttg |
221 |
Q |
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| T |
13512389 |
ggcttccttg |
13512398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 29 - 221
Target Start/End: Complemental strand, 21778221 - 21778028
Alignment:
| Q |
29 |
ttctattttctaattaccatctca-gaatagatttaaaatgtaagacaagaaaagtacagatgtctcgtaacttgtaagtgcaagcgagatggtaagaag |
127 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |
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| T |
21778221 |
ttctattttctaattaccatctcaagaatagatttaaaatgtaagacaagaaaattacagatgtctcgtaacctgtaagtgcaagcgagatggtaaaaag |
21778122 |
T |
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| Q |
128 |
actgcaaaatattctgttttttcaggaggatgggagtttgaatccacaatatcactcttcaaagcaaaatacttccctagtagtgacttccttg |
221 |
Q |
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| T |
21778121 |
accgtgagatattctgttttttcaggaggatgggagttcgaatccacaatatcattcttcaaagcaaaatacttccctagtggtgacttccttg |
21778028 |
T |
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