View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17385_low_63 (Length: 219)
Name: NF17385_low_63
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_63 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 54988812 - 54988871
Alignment:
| Q |
80 |
cccttccctagctagctagggatttcaatttcaccatgaatgccgccgaagaagaggaag |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54988812 |
cccttccctagctagctagggatttcaatttcaccatgaatgccgccgaagaagaggaag |
54988871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 54988724 - 54988766
Alignment:
| Q |
1 |
gcagaatatatacaaagtgacgaaggaatcaataatccccaaa |
43 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54988724 |
gcagaatatatacaaagtgacgaaggaatcaataatccccaaa |
54988766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University