View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_low_65 (Length: 210)

Name: NF17385_low_65
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_low_65
NF17385_low_65
[»] chr7 (2 HSPs)
chr7 (1-210)||(12164200-12164409)
chr7 (1-210)||(12175725-12175934)
[»] chr8 (1 HSPs)
chr8 (1-210)||(36668052-36668261)
[»] chr4 (1 HSPs)
chr4 (1-199)||(3321603-3321801)
[»] chr6 (2 HSPs)
chr6 (50-168)||(337821-337939)
chr6 (50-168)||(341859-341977)
[»] chr1 (11 HSPs)
chr1 (32-200)||(13065300-13065468)
chr1 (45-204)||(13244621-13244780)
chr1 (45-201)||(13100937-13101092)
chr1 (45-90)||(12963975-12964020)
chr1 (45-201)||(13007136-13007292)
chr1 (45-201)||(13070276-13070432)
chr1 (45-84)||(30368208-30368247)
chr1 (32-90)||(13080952-13081010)
chr1 (45-90)||(13094446-13094491)
chr1 (45-90)||(13129875-13129920)
chr1 (45-201)||(13204395-13204551)
[»] chr5 (1 HSPs)
chr5 (45-93)||(29669306-29669354)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 12164409 - 12164200
Alignment:
Q  1 tacaatgatagtgtattctctatactccgtcggaagggtcgaggaaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12164409 tacaatgatagtgtattctctatactccgtcggaagggtcgaggaaatatggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaa 12164310  T
Q  101 ggagggatagtttatgttccttcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12164309 ggagggatagtttatgttccttcttacaagttcattgcttttaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 12164210  T
Q  201 ttgctatagc 210  Q
    ||||||||||    
T  12164209 ttgctatagc 12164200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 12175934 - 12175725
Alignment:
Q  1 tacaatgatagtgtattctctatactccgtcggaagggtcgaggaaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaa 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||||||||| | |||    
T  12175934 tacaatgatagtgtattctctatactcggtcggaagggtcgaggaaatatggggagaagattgtttgaaatttaaaccagagaggtggatttctaagaaa 12175835  T
Q  101 ggagggatagtttatgttccttcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 200  Q
    ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12175834 ggagggataattcatgttccctcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 12175735  T
Q  201 ttgctatagc 210  Q
    ||||||||||    
T  12175734 ttgctatagc 12175725  T

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Target: chr8 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 36668261 - 36668052
Alignment:
Q  1 tacaatgatagtgtattctctatactccgtcggaagggtcgaggaaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaa 100  Q
    |||||||||| ||||||||||||||||  | |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||| ||||| | |||    
T  36668261 tacaatgatattgtattctctatactcaattggaagggtggaggaaatatggggagaagattgcttggaatttaaaccagagaggtgggtttctaagaaa 36668162  T
Q  101 ggagggatagtttatgttccttcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 200  Q
    ||||||| | || |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||    
T  36668161 ggagggacaattcatgtaccttcttacaagttcattgctttcaatgctggaccaaggagtcgtttgggtaaggatataagcttcattgagttgaagatgg 36668062  T
Q  201 ttgctatagc 210  Q
    ||||||||||    
T  36668061 ttgctatagc 36668052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 3321603 - 3321801
Alignment:
Q  1 tacaatgatagtgtattctctatactccgtcggaagggtcgaggaaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaa 100  Q
    |||||||||||||||||||||||| ||  | ||||| || |||||||| |||||||||||||||||||| ||||| || ||||||||||||||| | |||    
T  3321603 tacaatgatagtgtattctctatattcaattggaagagttgaggaaatttggggagaagattgcttggagtttaaaccagagaggtggatttctaagaaa 3321702  T
Q  101 ggagggatagtttatgttccttcttacaagttcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatg 199  Q
    ||||  ||| || |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||    
T  3321703 ggagaaataattcatgtaccttcttacaagtttattgctttcaatgctggaccaaggagttgtttgggtaaggagatgagtttcattgagatgaaaatg 3321801  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 337821 - 337939
Alignment:
Q  50 tggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgctttcaatgctg 149  Q
    |||||||||||||||||||| || ||||| ||||||||||||||| | | |||||| || |||||||  || |||||||| ||| ||  ||| |||||||    
T  337821 tggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgtttatgcaccatcttacaaattctttagttttaatgctg 337920  T
Q  150 gaccaaggagttgtttggg 168  Q
    ||||||||| |||||||||    
T  337921 gaccaaggacttgtttggg 337939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 341859 - 341977
Alignment:
Q  50 tggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgctttcaatgctg 149  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||| | | |||||| || |||||||  || |||||||||||| ||  ||| |||||||    
T  341859 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 341958  T
Q  150 gaccaaggagttgtttggg 168  Q
    |||| |||| |||||||||    
T  341959 gacctaggacttgtttggg 341977  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 13065300 - 13065468
Alignment:
Q  32 ggaagggtcgaggaaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagt 131  Q
    |||||| | ||| |||||||||||||||| ||| ||||||||||||||||||| ||||| ||  |||  |||   ||  |  |||| || ||||||||||    
T  13065300 ggaaggatggagaaaatatggggagaagactgcatggaatttaagcctgagagatggatatcaaaaagcggacaaattatacatgtaccgtcttacaagt 13065399  T
Q  132 tcattgctttcaatgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatgg 200  Q
    |||| ||||||||||| || ||||| |||||||||||||| ||||| | |||| |||| ||||| ||||    
T  13065400 tcatagctttcaatgcagggccaagaagttgtttgggtaaagatatcaccttcgttgaaatgaagatgg 13065468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 45 - 204
Target Start/End: Original strand, 13244621 - 13244780
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgctttcaa 144  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||| ||    | |||||||||  |  |||| || |||||||||||||| ||||||||    
T  13244621 aaatatggggagatgattgcttggaatttaagcctgaaagatggatatcagctagaggagggattataaatgtaccgtcttacaagttcatagctttcaa 13244720  T
Q  145 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggttgc 204  Q
    ||| || || || |||||| | || || ||| | |||||| || | ||||||||||||||    
T  13244721 tgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgc 13244780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 13101092 - 13100937
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgctttcaa 144  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||| | ||  | | ||||   ||  |  |||| || |||||||||||||| ||||||||    
T  13101092 aaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaa 13100993  T
Q  145 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 201  Q
    | | ||||| || |||||| ||||||||||||| ||||||||| | ||||| |||||    
T  13100992 t-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggt 13100937  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 90
Target Start/End: Original strand, 12963975 - 12964020
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggat 90  Q
    ||||||||||||||||||||||||||||||||||||| || |||||    
T  12963975 aaatatggggagaagattgcttggaatttaagcctgaaagatggat 12964020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 13007292 - 13007136
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgctttcaa 144  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||| | ||  | | ||||   ||  |  |||| || |||||||||||||| ||||||||    
T  13007292 aaatatggggagaagactgcatggaatttaagcctgagagatgggtgtcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaa 13007193  T
Q  145 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 201  Q
    | | || || || |||||| |||| |||||||| ||||||||| | ||||| |||||    
T  13007192 tacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggt 13007136  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 201
Target Start/End: Original strand, 13070276 - 13070432
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgctttcaa 144  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||| | ||  | | ||||   ||  |  ||||||| |||||||||||||| ||||||||    
T  13070276 aaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgttccatcttacaagttcatagctttcaa 13070375  T
Q  145 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 201  Q
    | | || || || |||||||||||||| ||| | || |||||| | ||||| |||||    
T  13070376 tacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggt 13070432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 84
Target Start/End: Original strand, 30368208 - 30368247
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagag 84  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  30368208 aaatatggggagaagattgcatggaatttaagcctgagag 30368247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 32 - 90
Target Start/End: Original strand, 13080952 - 13081010
Alignment:
Q  32 ggaagggtcgaggaaatatggggagaagattgcttggaatttaagcctgagaggtggat 90  Q
    |||||| | ||| ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  13080952 ggaaggatggagcaaatatggggagaggattgcttggagtttaagcctgagagatggat 13081010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 13094491 - 13094446
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggat 90  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||    
T  13094491 aaatatggggagaagactgcatggaatttaagcctgagagatggat 13094446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 13129920 - 13129875
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggat 90  Q
    |||||||||||||||| ||| ||||||||||||||||||| |||||    
T  13129920 aaatatggggagaagactgcatggaatttaagcctgagagatggat 13129875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 201
Target Start/End: Complemental strand, 13204551 - 13204395
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgctttcaa 144  Q
    |||||||||||||||| ||| ||||||||||||||||||| ||| | ||  | | ||||   ||  |  |||| || |||||||||||||| ||||||||    
T  13204551 aaatatggggagaagactgcatggaatttaagcctgagagatgggtatcagagacaggacacattatacatgtaccatcttacaagttcatagctttcaa 13204452  T
Q  145 tgctggaccaaggagttgtttgggtaaggatataagcttcattgagatgaaaatggt 201  Q
    | | || || || |||||||||||||| ||| | || |||||| | ||||| |||||    
T  13204451 tacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggt 13204395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 29669306 - 29669354
Alignment:
Q  45 aaatatggggagaagattgcttggaatttaagcctgagaggtggatttc 93  Q
    |||||||||| |||||||||||||||||||| || ||||||||| ||||    
T  29669306 aaatatggggggaagattgcttggaatttaaaccggagaggtggctttc 29669354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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