View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_low_68 (Length: 209)

Name: NF17385_low_68
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_low_68
NF17385_low_68
[»] chr7 (3 HSPs)
chr7 (57-160)||(23113964-23114066)
chr7 (2-60)||(23114102-23114160)
chr7 (114-159)||(7237781-7237825)
[»] scaffold0097 (1 HSPs)
scaffold0097 (114-160)||(21371-21416)
[»] chr8 (3 HSPs)
chr8 (114-160)||(22531234-22531279)
chr8 (114-160)||(22535919-22535964)
chr8 (114-160)||(25993840-25993885)
[»] chr6 (1 HSPs)
chr6 (114-160)||(33091285-33091330)
[»] chr5 (1 HSPs)
chr5 (114-160)||(13191665-13191710)
[»] chr3 (2 HSPs)
chr3 (114-160)||(20983377-20983422)
chr3 (114-160)||(49368313-49368358)
[»] chr2 (1 HSPs)
chr2 (114-160)||(20717534-20717579)
[»] chr1 (2 HSPs)
chr1 (114-160)||(30190752-30190797)
chr1 (114-160)||(31991576-31991621)


Alignment Details
Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 23114066 - 23113964
Alignment:
Q  57 tgagcagacaccatagaagaagaaaatggagaaaaaacgtatggaaaataagtatttagtagaggaagaggcaaataaaattgagggtagaatagtaaca 156  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  23114066 tgagcagacaccatagaagaagaaaatggagaaaaaacttatggaaaataagtatttagtagaggaagaggcaaataaaa-tgagggtagaatagtaaca 23113968  T
Q  157 tttc 160  Q
    ||||    
T  23113967 tttc 23113964  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 23114160 - 23114102
Alignment:
Q  2 agtacagtaatgttgcagtgagaacaaaggcggaagaaggaaagaaggtctactgtgag 60  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23114160 agtacagtaatgttgcagtgagaacaaaggcggaagaaggaaagaaggtctactgtgag 23114102  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 7237781 - 7237825
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacattt 159  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||    
T  7237781 agtagaggaagaggcaaataaaa-tgagggtagaatagtaaaattt 7237825  T

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Target: scaffold0097 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 21371 - 21416
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  21371 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 21416  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 22531234 - 22531279
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  22531234 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 22531279  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 22535919 - 22535964
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  22535919 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 22535964  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 25993840 - 25993885
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  25993840 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 25993885  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 33091330 - 33091285
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  33091330 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 33091285  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 13191665 - 13191710
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  13191665 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 13191710  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Complemental strand, 20983422 - 20983377
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  20983422 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 20983377  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 49368313 - 49368358
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  49368313 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 49368358  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 20717534 - 20717579
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  20717534 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 20717579  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 30190752 - 30190797
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||    
T  30190752 agtagaggaagaggcaaataaaa-ggagggtagaatagtaaaatttc 30190797  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 31991576 - 31991621
Alignment:
Q  114 agtagaggaagaggcaaataaaattgagggtagaatagtaacatttc 160  Q
    ||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  31991576 agtagaggaagagacaaataaaa-tgagggtagaatagtaatatttc 31991621  T

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