View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_7 (Length: 596)
Name: NF17385_low_7
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 273 - 586
Target Start/End: Original strand, 6116882 - 6117190
Alignment:
| Q |
273 |
gaggatgctaactccatatacttgttattcttaattgatttaattaaaaatgtatagtggactagttgttcaaattgaggtcatgtcttattttctctcg |
372 |
Q |
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| T |
6116882 |
gaggatgctaactccatatacttgttattcataattgatttaattaaaaatgtatagtggact-----ttcaaattgaggtcatgtcttattttctctcg |
6116976 |
T |
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| Q |
373 |
ccagttgtgtttcaaacttgttaagcattatggtgtttttggaaaaacatcagattctcatgatctaagatagtcttagcagaagatccagatcattcat |
472 |
Q |
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| T |
6116977 |
ccagttgtgtttcaaacttgttaagcattatggtgtttttggaaaagcatcagattctcatgatctaagatagtcttagcagaagatccagatcattcat |
6117076 |
T |
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| Q |
473 |
ttgaaaagaatgtatgtttatcaatgaaaatatattctacgttttgtaggaattacggtgtgtttatcaatgattttgtcaacataataattctgattaa |
572 |
Q |
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| T |
6117077 |
ttgaaaagaatgtatgtttatcaatgaaaatatattctacgttgtgtaggaattacggtgtgtttatcaatgattttgtgaacataataattctgattaa |
6117176 |
T |
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| Q |
573 |
tttatttgatgatg |
586 |
Q |
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| T |
6117177 |
tttttttgatgatg |
6117190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 6116662 - 6116880
Alignment:
| Q |
21 |
gaacgatgccaggaggaaacaggagcggactggccccaagttaaacatgtcnnnnnnntaatattcaaggaaaatttgaggcagtgaaggtactatacta |
120 |
Q |
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| T |
6116662 |
gaacgatgccagagtgaaacaggagtagattggccccaagttaaacatgtccaaaacataattttgaaggaaaatttgaggcagtaaaggtactc--cta |
6116759 |
T |
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| Q |
121 |
ccaaccttttattactattgtgaattttgtttctgtttcacattgtgt--tttgattctcttagcttcaatatagtttgaattgacttctgaaaattagg |
218 |
Q |
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| T |
6116760 |
ccaacctttaactaatactgtgaattttgtttctgcttgatattttgtattttcattcttttaatttcaatataatttgaattgactcctgaaaaatagg |
6116859 |
T |
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| Q |
219 |
atatagtaagagaaccacttc |
239 |
Q |
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| T |
6116860 |
acatagttatagaatcacttc |
6116880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 183 - 304
Target Start/End: Complemental strand, 6122589 - 6122464
Alignment:
| Q |
183 |
cttcaatatagtttgaattgacttctgaaaattaggatatagtaagagaaccacttctgatatagtcattgaaaaggtagtc----ttatgcttgaggat |
278 |
Q |
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| T |
6122589 |
cttcaatacagtttgaattgacttctgaaaaatataacatagtaagagaatcacttctgaaatattcattgaaaatatagtcttatttatgcttgaggat |
6122490 |
T |
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| Q |
279 |
gctaactccatatacttgttattctt |
304 |
Q |
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| T |
6122489 |
tccgactccatatacttgttattctt |
6122464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 91 - 158
Target Start/End: Complemental strand, 6122706 - 6122639
Alignment:
| Q |
91 |
aaaatttgaggcagtgaaggtactatactaccaaccttttattactattgtgaattttgtttctgttt |
158 |
Q |
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| T |
6122706 |
aaaatttgaggcggtgaaggtactgtactaccaactttttactaatactgtgaattttgtttctgttt |
6122639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 409 - 499
Target Start/End: Complemental strand, 6122404 - 6122313
Alignment:
| Q |
409 |
ttttggaaaaacatcagattctcatgatctaagatagtcttagcagaagatccagatcattcatttgaaaagaatgta-tgtttatcaatga |
499 |
Q |
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| T |
6122404 |
ttttgcaaaaacatcagattttcatgatgtaggatagtcttatcataaaatccagatcattcatacgagaagaatgtattttttatcaatga |
6122313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 473 - 528
Target Start/End: Original strand, 13752902 - 13752957
Alignment:
| Q |
473 |
ttgaaaagaatgtatgtttatcaatgaaaatatattctacgttttgtaggaattac |
528 |
Q |
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| T |
13752902 |
ttgaaaaaaatgtatgtttatcaatcaaaatacattcaaccttttgtaggaattac |
13752957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 433
Target Start/End: Original strand, 13752825 - 13752872
Alignment:
| Q |
386 |
aaacttgttaagcattatggtgtttttggaaaaacatcagattctcat |
433 |
Q |
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| T |
13752825 |
aaacatgttaagctttatggtgtttttgcaaaaacatcagattttcat |
13752872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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