View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_8 (Length: 589)
Name: NF17385_low_8
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 19 - 579
Target Start/End: Complemental strand, 17573798 - 17573214
Alignment:
| Q |
19 |
tttaaactttggatcggggtgttacatttaatt--gaggttaaaactgtttatattttcactgcatgcatcttt-gcctcccttatcatgattcatgtgt |
115 |
Q |
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| T |
17573798 |
tttaaactttggatcagggtgttacatttaattttgagcttaaaactgtttatattttcactgcatgcatcttttgcctcccttgtcctgattcatgtgt |
17573699 |
T |
|
| Q |
116 |
ttttag-agggtaatcaagtggttaatcatcttcacttaaggtcaaattgttctagagaaatcaagtttgaatcctag--------------------ac |
194 |
Q |
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| T |
17573698 |
tttttttagggtaatcgagtcgttaatcaacttcacttaaggtcaaattgttctagagaaatcaagtttgaatcctagctgaaacaatcattatctagat |
17573599 |
T |
|
| Q |
195 |
ttaacttatctctcggctgaacttagaattaccatggccgctttccacgggaacgagagggttatgaattacatatcactcgattgaatagataaaataa |
294 |
Q |
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| T |
17573598 |
ttaatttatctctcggctgaacttagaattaccaaggccgcgttccatgggaatgagagggtaataaattacatatcactcaatttaatagataaaataa |
17573499 |
T |
|
| Q |
295 |
acagcaatttcttaggttctgaatgtatcaaaatttgttgaatattttttaatctgtgttttgatagtctgattatgcgtgaaattcgtcttctattaat |
394 |
Q |
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| T |
17573498 |
acagcaatttcttaggttctgaatgtatcaaaatttgttcaatatttttgaatctgtgttttgatagtctgattatgcgtgaaattcgtcttctattaat |
17573399 |
T |
|
| Q |
395 |
taactaattagttttgtcctcgaatgtgtctactactggtcaatttggtccataaattactaacataagaccctttcaaaaatgtttttgaactttctca |
494 |
Q |
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| T |
17573398 |
taactaattagttttgtcctcgaatgtgtctactactggtcaatttggtccataaattactaacataagaccctttcaaaaatgtttatgaactttctca |
17573299 |
T |
|
| Q |
495 |
acggggtaatagttattttggttcctgaatatgcaacatagtcataatagtctatcaatgtatcgaaatttcaaattggtctctg |
579 |
Q |
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| T |
17573298 |
acggggtaatagttattttggttcctgaatatgcaacgtagtcataatagtctatcaatgtatcgaaatttcaaattggtctctg |
17573214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 497 - 569
Target Start/End: Original strand, 17381280 - 17381354
Alignment:
| Q |
497 |
ggggtaatagttattttggttcctgaatatgcaaca--tagtcataatagtctatcaatgtatcgaaatttcaaa |
569 |
Q |
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| T |
17381280 |
ggggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaa |
17381354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 569
Target Start/End: Original strand, 12922168 - 12922236
Alignment:
| Q |
503 |
atagttattttggttcctgaatatgcaaca--tagtcataatagtctatcaatgtatcgaaatttcaaa |
569 |
Q |
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|||||||||||||| ||||||| || || | |||||| |||||| | ||||||||||||||||||||| |
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| T |
12922168 |
atagttattttggtccctgaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaa |
12922236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 497 - 579
Target Start/End: Original strand, 21601904 - 21601987
Alignment:
| Q |
497 |
ggggtaatagttattttggttcctgaatatgcaaca--tagtcataatagtctatcaatgtatcgaaatttcaaattggtctctg |
579 |
Q |
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|||||||| || |||||||| |||||||||| |||| |||||| ||||||| ||||||||||| ||||| |||| | ||||||| |
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| T |
21601904 |
ggggtaatggtcattttggt-cctgaatatgtaacaaatagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctg |
21601987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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