View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17386_high_10 (Length: 345)
Name: NF17386_high_10
Description: NF17386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17386_high_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 340
Target Start/End: Complemental strand, 27858488 - 27858172
Alignment:
| Q |
24 |
tcatcagaggcaataatgttagctggtttagcttttaaaaggaaatggcagactaagagaaaagcagaaggcaaaccttatgataagccgaacatagtta |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
27858488 |
tcatcagaggcaataatgttagctggtttagcttttaaaaggaaatggcagactaagagaaaagcagaaggcaaaccttatgataagcctaacatagtta |
27858389 |
T |
|
| Q |
124 |
ccggagctaatgtgcaggttgatcatgaattatgtttataatgttatgaagtttgaaataactactaatatgtgtttaatgcatgctcacataatgagaa |
223 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27858388 |
ctggagctaatgtgcaggttgatcttgaattatgtttataatgttatgaagtttgaaataactactaatatgtgtttaatgcatgctcacataatgagaa |
27858289 |
T |
|
| Q |
224 |
ataggtagaagtgtatgtttggataagtggtgggtttgatataaccacgacagtatcgtgattttgataaagctctaaaatgtagcttttgtcaaaatcg |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27858288 |
ataggtagaagtgtatgtttggataagtggtgggtttgatataaccacgacagtatcgtgattttgataaagctctaaaatgtagcttttgtcaaaatcg |
27858189 |
T |
|
| Q |
324 |
tagcggatcatcgtgat |
340 |
Q |
| |
|
| | ||||||||||||| |
|
|
| T |
27858188 |
tggtggatcatcgtgat |
27858172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 29179305 - 29179423
Alignment:
| Q |
24 |
tcatcagaggcaataatgttagctggtttagcttttaaaaggaaatggcagactaagagaaaagcagaaggcaaaccttatgataagccgaacatagtta |
123 |
Q |
| |
|
||||||||||| |||||||||||||| || || || |||||||| ||||||| || |||||| ||| || || |||||||| || || ||||| || | |
|
|
| T |
29179305 |
tcatcagaggctataatgttagctggattggcattcaaaaggaagtggcagaacaaaagaaaacaagagggaaagccttatgacaaacctaacattgtca |
29179404 |
T |
|
| Q |
124 |
ccggagctaatgtgcaggt |
142 |
Q |
| |
|
| ||||| ||||| ||||| |
|
|
| T |
29179405 |
ctggagccaatgtccaggt |
29179423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 321
Target Start/End: Original strand, 11271770 - 11271810
Alignment:
| Q |
281 |
gtgattttgataaagctctaaaatgtagcttttgtcaaaat |
321 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| |
|
|
| T |
11271770 |
gtgattttgataaagctccaaagtgtagtttttgtcaaaat |
11271810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University