View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17386_high_12 (Length: 334)
Name: NF17386_high_12
Description: NF17386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17386_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 87 - 211
Target Start/End: Original strand, 32062504 - 32062628
Alignment:
| Q |
87 |
caacatgtttgggaagccaatagactctgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttt |
186 |
Q |
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| T |
32062504 |
caacatgtttgggaagccaatagactttgttagaaagaaaaggtcactgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttt |
32062603 |
T |
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| Q |
187 |
tcaatccttgccgatgatgatgatg |
211 |
Q |
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| T |
32062604 |
tcaatccttgccgatgatgatgatg |
32062628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 236 - 313
Target Start/End: Original strand, 32062680 - 32062757
Alignment:
| Q |
236 |
gattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
313 |
Q |
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| T |
32062680 |
gattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
32062757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 32062551 - 32062622
Alignment:
| Q |
242 |
tgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcggatgatg |
313 |
Q |
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| T |
32062551 |
tgaagcaagagaatgcaccggagaacaatagtggaaaggaattcggtgggttttcaatccttgccgatgatg |
32062622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 206
Target Start/End: Original strand, 32062652 - 32062758
Alignment:
| Q |
100 |
aagccaatagactctgttagaaagaaaaggtcattgaagcaagagaatgcactggagaacaatagtggaaaggaattcggtgggttttcaatccttgccg |
199 |
Q |
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| T |
32062652 |
aagccaatagattttgttcggaaaaaaagattaatgaagcaggagaaagcaccggggaacaacagtggaaaggaactcagtgggttttcgatacttgcgg |
32062751 |
T |
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| Q |
200 |
atgatga |
206 |
Q |
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| T |
32062752 |
atgatga |
32062758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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