View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17386_high_21 (Length: 318)
Name: NF17386_high_21
Description: NF17386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17386_high_21 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 318
Target Start/End: Complemental strand, 30010470 - 30010163
Alignment:
| Q |
11 |
cagagacacaatcaaatgtaacaccccaaacacctgaaatttagaagcnnnnnnnnnnnnnnnnnngtcaaatttattacagattagatgtagtggtata |
110 |
Q |
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| T |
30010470 |
cagagacacaatcaaatgtaacaccccaaacacctgaaatttagaagcaaaaaaattccaaaaaaagtcaaatttattacagattagatgtagtggtata |
30010371 |
T |
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| Q |
111 |
tatggttctaagcggcgaaaattgattatgactgaattaaatttttaaaattcatttttagttaaaatcaattcagggtataatgatttatgtttggatt |
210 |
Q |
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| T |
30010370 |
tatggttctaagcggcgaaaattgattatgactgaattaaatttttaaaattcatttttagttaaaatcaatttagggtataatgatttatgtttggatt |
30010271 |
T |
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| Q |
211 |
gattcacatgaaactgagttgaataataaatttgagcaataaaatctactaatcctatataatcaatttctatagtcaaaatcaattctaatcgaaaact |
310 |
Q |
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| T |
30010270 |
gattcacatgaaactgagttgaataataaatttgagcaataaaatctactaatcctatataatcaatttctatagtcaaaatcaattctaatcgaaaact |
30010171 |
T |
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| Q |
311 |
ctcaaaca |
318 |
Q |
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| T |
30010170 |
ctcgaaca |
30010163 |
T |
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Target: scaffold0361 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 14091 - 14143
Alignment:
| Q |
194 |
tgatttatgtttggattgattcacatgaaactgagttgaataataaatttgag |
246 |
Q |
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| T |
14091 |
tgatttatgtttggatacattcatgtgaaagtgagttgaaaaataaatttgag |
14143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 28228961 - 28228905
Alignment:
| Q |
192 |
aatgatttatgtttggattgattcacatgaaactgagttgaataataaatttgagca |
248 |
Q |
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| T |
28228961 |
aatgatttatgtgtggatagtttcacatgaaagttagttaaacaataaatttgagca |
28228905 |
T |
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