View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17386_high_5 (Length: 386)
Name: NF17386_high_5
Description: NF17386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17386_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 41785082 - 41784732
Alignment:
| Q |
1 |
aagttactacatttaatgcaccctcagtagcatcaatctagttggataactcattttcatctcatcaatctagttgccactttaggatttcacctatcac |
100 |
Q |
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| T |
41785082 |
aagttactacatttaatgcaccctcagtagcatcaatctagttggataactcattttcatctcatcaatctagttgccactttaggatttcacctatcac |
41784983 |
T |
|
| Q |
101 |
attatagaaaaagcaccctcaatagcaaataggtggataaaatatttgttgtttttaaaattggaggactaaactcgtaaaattgcaaaacatatttgta |
200 |
Q |
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| T |
41784982 |
attatagaaaaagcaccctcaatagcaaataggtggataaaatatttgttgtttttaaaattggaggactaaactcgtaaaattgc-aaacatatttcta |
41784884 |
T |
|
| Q |
201 |
gtgtttcatttgttagtaattttatgaactaacttgat--nnnnnnnnnncacatttaaagattaaattaattatgtaagaaacatattc-------agc |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
41784883 |
gtgtttcatttgttagtaattttatgaactaacttgatcaacaaaaaaaacacatttaaggattaaattaattatgtaagaaacatattcagctatgagc |
41784784 |
T |
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| Q |
292 |
gatcacaaaaactaacatatgaggcacttacggacgtgtttacaatgttgat |
343 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
41784783 |
tatcacaaaaactaacacatgaggcacttacggacgtgtttacaattttgat |
41784732 |
T |
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