View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17386_high_7 (Length: 369)
Name: NF17386_high_7
Description: NF17386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17386_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 348
Target Start/End: Complemental strand, 6315369 - 6315042
Alignment:
| Q |
23 |
catcatcatttgtaaagggatcc-atctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggttttttcca |
121 |
Q |
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| T |
6315369 |
catcttcatttgtaaagggatcccatctgcccaacaagtctccgttgctactaatccacctgttgccatatgacaagtacccctgttgtggtcttttcca |
6315270 |
T |
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| Q |
122 |
tctactatatgcctcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaact-aatagcttgttggattg |
220 |
Q |
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| T |
6315269 |
tctactatatgcctcgtgttaatctccaaattctaagtattttgctgctttttcttttgccatttcaaaacaacagggaactaaatagcttgttggattg |
6315170 |
T |
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| Q |
221 |
ttgccaggcatattccaaagctgcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatga |
320 |
Q |
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| T |
6315169 |
ttgccaggcatattccaaagctgcttacttcttctcttccatatattccacaacaccatagttaaaccattcataatcattgttgtgcagttgttgatga |
6315070 |
T |
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| Q |
321 |
cagtaaaaataaactctgcacatgatga |
348 |
Q |
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| T |
6315069 |
cagtaaaaataaattctgcacatgatga |
6315042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 6318236 - 6318172
Alignment:
| Q |
286 |
accattcataatcattgttgtgcagttgttgatgacagtaaaaataaa--ctctgcacatgatga |
348 |
Q |
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| T |
6318236 |
accattcataatccttgttgtgcagctgttgatgacagtaaaattaaattctctccacatgatga |
6318172 |
T |
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