View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17386_low_1 (Length: 474)
Name: NF17386_low_1
Description: NF17386
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17386_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 4 - 461
Target Start/End: Complemental strand, 29472939 - 29472484
Alignment:
| Q |
4 |
caatctgtaacggttttcaatgttttcaaaacggcaacatgactgaaactgaggtcccatcaatcacatttgaatataattttctgcaatatcaatgatc |
103 |
Q |
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| T |
29472939 |
caatctgcaacggttttcaatgttttcaaaacggcaacatgactgaaattgaggtcccatcattcacatttgaatataattttctacaataccaatgatc |
29472840 |
T |
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| Q |
104 |
gtgatacggtttcaaccattaggtcaactaatgtcgaacttaatttggatttcannnnnnnatttgattaacttgtttaacaagtttcagttgtttctca |
203 |
Q |
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| T |
29472839 |
gtgacacggtttcaaccattaggtcaattaatgtcgaacttaatttggatttcattttttgatttgattaacttgtttaacaagtttcagttgtttctca |
29472740 |
T |
|
| Q |
204 |
tcaaattcaggagacaaactattgatataattatttttctcattttctttatagacttgtgcaggtgctgtatttctcactgattttgtgttttggtttg |
303 |
Q |
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| T |
29472739 |
tcaaattcaggagacaaactattgatataattatttttctcattttctttatagacttgtgcaggcgctgtatttctcactgattttgtattttggtttg |
29472640 |
T |
|
| Q |
304 |
tcctttatccagtgagaacatccaatcattacagtcttgattttgtaagtatcgtaaagtaatttgagatttgcattgaagatatatatatcaatgtcat |
403 |
Q |
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| T |
29472639 |
tcctttatccagtgagaacatccaatcattacagtcttgattttgtaagtatcataaagtaatttgagatttgcattga--atatatatatcaatgtcat |
29472542 |
T |
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| Q |
404 |
aagatacttttctttcatttgaaagtatttgcacttttcaattcttgcagttgatttt |
461 |
Q |
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| T |
29472541 |
aagatacttttctttcatttgaaagtatttgcacttttcaattcttgcagttgatttt |
29472484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 168 - 355
Target Start/End: Complemental strand, 29463456 - 29463269
Alignment:
| Q |
168 |
tgattaacttgtttaacaagtttcagttgtttctcatcaaattcaggagacaaactattgatataattatttttctcattttctttatagacttgtgcag |
267 |
Q |
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|||||||||||||| |||||||||| | ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29463456 |
tgattaacttgtttgacaagtttcaactatttctcatcaaattcaggagacaaattattgatatagttatttttctcattttctttatagacttgtgcag |
29463357 |
T |
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| Q |
268 |
gtgctgtatttctcactgattttgtgttttggtttgtcctttatccagtgagaacatccaatcattacagtcttgattttgtaagtat |
355 |
Q |
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| T |
29463356 |
gtgctgtatttctcactgattttgtattttggttcgtcctttatccagtgagagcattcaataacgacaaacttgattttgtaagtat |
29463269 |
T |
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