View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17387_high_13 (Length: 340)
Name: NF17387_high_13
Description: NF17387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17387_high_13 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 15 - 340
Target Start/End: Complemental strand, 5889064 - 5888739
Alignment:
| Q |
15 |
gctgttgctgcatcgaagcaagtagaaaagacagttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacata |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5889064 |
gctgttgctgcatcgaagcaagtagaaaagacggttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacata |
5888965 |
T |
|
| Q |
115 |
tggaagcagaagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaacttaaacaagaagaacaagaactagaaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5888964 |
tggaagcagaagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaactaaaacaagaagaacaagaactagaaaa |
5888865 |
T |
|
| Q |
215 |
actcaatcaaaaaattttgtttgctatggatcttaaatctaaacatagtaaagcttctgtgttgcttcttgatttgaaagctgagttaaatgcctatatg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5888864 |
actcaatcaaaaaattttgtttgctatggatcttaaatctaaacatagtaaagcttctgcgttgcttcttgatttgaaagctgagttaaatgcctatatg |
5888765 |
T |
|
| Q |
315 |
gaatcaaagtcaaaccaagaaggaga |
340 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5888764 |
gaatcaaagtcaaaccaagaaggaga |
5888739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 24 - 337
Target Start/End: Original strand, 46805827 - 46806140
Alignment:
| Q |
24 |
gcatcgaagcaagtagaaaagacagttgaagatttgactattgagttgattgccacaaaagagtctttggaatcagcacattctgcacatatggaagcag |
123 |
Q |
| |
|
||||| ||| ||||||| ||| |||| |||||||| |||||||| | || |||||||||||||| || || | || ||| ||||||| ||||||||| |
|
|
| T |
46805827 |
gcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaagagtcattagagactgctcatgctgcacacttggaagcag |
46805926 |
T |
|
| Q |
124 |
aagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaacttaaacaagaagaacaagaactagaaaaactcaatca |
223 |
Q |
| |
|
| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |||| |||| || | | | ||||| | |
|
|
| T |
46805927 |
aggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaacttaaacaggcagaagaagagctccagagaatcaatga |
46806026 |
T |
|
| Q |
224 |
aaaaattttgtttgctatggatcttaaatctaaacatagta-aagcttctgtgttgcttcttgatttgaaagctgagttaaatgcctatatggaatcaaa |
322 |
Q |
| |
|
|||| |||| ||| | |||||| |||||||||| | | | ||| |||| ||||| ||||||||||||||| | |||| || |||||||||||||| |
|
|
| T |
46806027 |
gcaaatgttgtctgcaaaggatctcaaatctaaac-tggaagcagcctctggtttgctgcttgatttgaaagctaaattaactgtttatatggaatcaaa |
46806125 |
T |
|
| Q |
323 |
gtcaaaccaagaagg |
337 |
Q |
| |
|
|| ||| |||||||| |
|
|
| T |
46806126 |
gttaaagcaagaagg |
46806140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University