View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17387_high_4 (Length: 407)
Name: NF17387_high_4
Description: NF17387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17387_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 24 - 383
Target Start/End: Original strand, 28536446 - 28536805
Alignment:
| Q |
24 |
tcatcagtataaagtaatgctctgaaatttcaaaaccaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgaggttgagcgt |
123 |
Q |
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| T |
28536446 |
tcatcagtataaagtaatgctctgaaatttcaaaaccaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgt |
28536545 |
T |
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| Q |
124 |
gcgaggaaagcaagaaggaagaacgacacaaaaagtttgtagatgtcatatagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaa |
223 |
Q |
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|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28536546 |
gcgaagaacgcaagaaggaagaacgacacaaaaagtttgtagatgtcatatagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaa |
28536645 |
T |
|
| Q |
224 |
taaaaatttccactaaattaaccaggaaacattacgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttg |
323 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28536646 |
taaaaatttccactgaattaaccaggaaacattacgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttg |
28536745 |
T |
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| Q |
324 |
gccgctttgaaattccatatgaatattcaaaccaaattcctatatatttgtcattgatga |
383 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28536746 |
gccgctttgaaattccatatgaatattcaaaccaaattcctgtatatttgtcattgatga |
28536805 |
T |
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