View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17387_high_5 (Length: 405)
Name: NF17387_high_5
Description: NF17387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17387_high_5 |
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| [»] scaffold0129 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 22 - 384
Target Start/End: Complemental strand, 13473653 - 13473298
Alignment:
| Q |
22 |
catcatcaatatgtttttggttccgagtatgttgtatatgctttcaggtgagaggtttgagaataaggttagattagatccaccaccgccaatgagatgg |
121 |
Q |
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| T |
13473653 |
catcttcaatatgtttttggtttcgagtatgttgtatatgctttcaggtgagaggtttgagaataaggttagattagatccaccaccgccat----atg- |
13473559 |
T |
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| Q |
122 |
acatcatctaccaagtgataattttcttcctcatattttaggttctgctattaatggcattatttgtttctataattgtctcgatcatagaaatgtagta |
221 |
Q |
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| T |
13473558 |
--atcatctaccaagtgacaattttcttcttcatattttaggttctgctattaatggcattatttgtttctataattgtctcgatcatagaaatgtagta |
13473461 |
T |
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| Q |
222 |
ttatggaacccggctactaaggaaattaaggtcgtttaccctagccttaatgagtgtctatctaatgtcactaatgcatttagtcttcatgcatttggtt |
321 |
Q |
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| T |
13473460 |
ttatggaacccggctactaaggaaattaaggtcgtttctcctagccttaacgagtgtctatctaatgtcactaatgcatttagtcttcatgcatttggtt |
13473361 |
T |
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| Q |
322 |
atgatcatgttagagatgatttcaatgtcattcgacgtttgtattgtgatatatctgatgatg |
384 |
Q |
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| T |
13473360 |
atgatcatgttagagatgatttcaatgtcatttgacgtttgtattgtgatatatctgatgatg |
13473298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 357
Target Start/End: Original strand, 26606657 - 26606709
Alignment:
| Q |
305 |
tcttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcgac |
357 |
Q |
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| T |
26606657 |
tcttcatggatttggttatgattctgttagagatgattacaaggtgattcgac |
26606709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 307 - 342
Target Start/End: Complemental strand, 27736033 - 27735998
Alignment:
| Q |
307 |
ttcatgcatttggttatgatcatgttagagatgatt |
342 |
Q |
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| T |
27736033 |
ttcatggatttggttatgatcatgttagagatgatt |
27735998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 87
Target Start/End: Original strand, 9764 - 9801
Alignment:
| Q |
50 |
atgttgtatatgctttcaggtgagaggtttgagaataa |
87 |
Q |
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| T |
9764 |
atgttgtatttgctttctggtgagaggtttgagaataa |
9801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 17650 - 17601
Alignment:
| Q |
307 |
ttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcga |
356 |
Q |
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| T |
17650 |
ttcatggatttggttatgaccatgttagagatgactacaaagtcattcga |
17601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 356
Target Start/End: Complemental strand, 34046 - 33997
Alignment:
| Q |
307 |
ttcatgcatttggttatgatcatgttagagatgatttcaatgtcattcga |
356 |
Q |
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| T |
34046 |
ttcatggatttggttatgagcatgttagagatgactacaaggtcattcga |
33997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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