View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17387_low_1 (Length: 241)
Name: NF17387_low_1
Description: NF17387
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17387_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 23428126 - 23427924
Alignment:
| Q |
22 |
gattatgtgttaagagaactgaagatagaagtttgcaagcttactgcgttgctcgttgataacaatatgctatagatttaactaaaaaccaagtgttgca |
121 |
Q |
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| T |
23428126 |
gattatgtgttaagagaactgaagatagaagtttgcaagcttactgcgttgctcgttgataacaatatgctatagatttagctaaaaaccaagtgttgca |
23428027 |
T |
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| Q |
122 |
tgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcccattgaggaacaacta |
221 |
Q |
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| T |
23428026 |
tgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcccattgaggaacaacta |
23427927 |
T |
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| Q |
222 |
tct |
224 |
Q |
| |
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||| |
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| T |
23427926 |
tct |
23427924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 221
Target Start/End: Complemental strand, 17507492 - 17507306
Alignment:
| Q |
37 |
gaactgaagatagaagtttgcaagcttactgcgttgctcgttgataacaa-tatgctatagatttaactaaaaaccaagtgttg-catgtcagaagtaaa |
134 |
Q |
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| T |
17507492 |
gaactgaagatagaagtttgcaagcctattgcattcctcattaacaataaatttgctatagatttagcaaagaatcaagtgttttcatgaaagaagcaaa |
17507393 |
T |
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| Q |
135 |
cacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcccattgaggaacaacta |
221 |
Q |
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| T |
17507392 |
cacattaaggcaaaatttcactttattagagaacaagtgaacaaagaaatgtttaaggtcatacattgttcaatagaggaacaacta |
17507306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 205
Target Start/End: Original strand, 1833936 - 1834028
Alignment:
| Q |
113 |
agtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcc |
205 |
Q |
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||||||||||| |||| |||||||| ||||||| |||||||||||| |||||||| ||||| | ||| |||||| |||| ||||||||| |
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| T |
1833936 |
agtgttgcatgaaagaaacaaacacattgaggcaagatttcactttataagagaacatgtgaacgagaaaaggcttaatgtcaaacattgtcc |
1834028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 6240370 - 6240571
Alignment:
| Q |
22 |
gattatgtgttaagagaactgaagatagaagtttgcaagcttactgcgttgctcgttgataacaatat--gctatagatttaactaaaaaccaagtgttg |
119 |
Q |
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||||||| ||| | |||| ||||||||||||| ||||||| || ||| || ||| ||||||| || || || ||||||||| |||| || | | || | |
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| T |
6240370 |
gattatgggttgaaagaaatgaagatagaagtatgcaagcctattgcatttctcattgataaaaaaatctgccatagatttagctaagaatctaatgctt |
6240469 |
T |
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| Q |
120 |
catgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcccattgaggaacaac |
219 |
Q |
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| T |
6240470 |
catggaagaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacattgtcaaactgagggacaac |
6240569 |
T |
|
| Q |
220 |
ta |
221 |
Q |
| |
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|| |
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|
| T |
6240570 |
ta |
6240571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 6211435 - 6211619
Alignment:
| Q |
22 |
gattatgtgttaagagaactgaagatagaagtttgcaagcttactgcgttgctcgttgataacaatatgct--atagatttaactaaaaaccaagtgttg |
119 |
Q |
| |
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||||||| ||| | |||| ||||||||||||||||||||| || ||| || ||| ||||||| || || || ||||||||| |||| || | | || | |
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| T |
6211435 |
gattatgggttgaaagaaatgaagatagaagtttgcaagcctattgcatttctcattgataaaaaaat-ctgcatagatttagctaagaatctaatgctt |
6211533 |
T |
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| Q |
120 |
catgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaaggtcatacattgtcc |
205 |
Q |
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| T |
6211534 |
catggaagaagcaaacacattgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacactgtcc |
6211619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 16943954 - 16943892
Alignment:
| Q |
113 |
agtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaa |
175 |
Q |
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||||||||||| ||||| |||||||||||| ||| ||||||||||||||||| || ||||| |
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| T |
16943954 |
agtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
16943892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 175
Target Start/End: Complemental strand, 17014619 - 17014557
Alignment:
| Q |
113 |
agtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaa |
175 |
Q |
| |
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||||||||||| ||||| |||||||||||| ||| ||||||||||||||||| || ||||| |
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| T |
17014619 |
agtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
17014557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 15489951 - 15489883
Alignment:
| Q |
92 |
tatagatttaactaaaaaccaagtgttgcatgtcagaagtaaacacatagaggcaatatttcactttat |
160 |
Q |
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|||||||||| |||| || ||||||||||| ||||| |||||||| ||| |||||||||||||||| |
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| T |
15489951 |
tatagatttagctaagaattcagtgttgcatggaagaagcaaacacattgagacaatatttcactttat |
15489883 |
T |
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