View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_high_2 (Length: 637)
Name: NF17388_high_2
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_high_2 |
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| [»] scaffold1067 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Complemental strand, 15581291 - 15580931
Alignment:
| Q |
10 |
tccaagaatatactattatcttatctagcacattgtttcaaccaaatattatttacataccaaaatgagttcaagaaataatcataataatttgggatat |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15581291 |
tccaaaaatatactattatcttatctagcacattgtttcaaccaaatattatttacataccaaaatgagttcaagaaataatcataataatttgggatat |
15581192 |
T |
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| Q |
110 |
tcacaaaaaccttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagattgatatggcctacaacaatggtcctcctcctg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15581191 |
tcacaaaaaccttcagataagaaggattcgagagatcctactaagaaaagtccaatctcaaaccagattgatatggcctacaacaatggtcctcctcctg |
15581092 |
T |
|
| Q |
210 |
tggcaaatactggaaatcttcctgcaaatcagaatcctttggctaaccaaatgaatattggttacaacacttgatatggccaacatgcaggtatatccag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15581091 |
tggcaaatactggaaatcttcctgcaaatcagaatcctttggctaaccaaatgaatattggttacaacacttgatatggccaacatgcaggtatattgag |
15580992 |
T |
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| Q |
310 |
aaactaggattgtatttgaattttcttacaaacagtaacaaattaataagtctcattaaat |
370 |
Q |
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| T |
15580991 |
aaactaggattgtatttgaattttcttacaaacagtaacaaattaatatgtctcattaaat |
15580931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 30 - 199
Target Start/End: Complemental strand, 15549873 - 15549703
Alignment:
| Q |
30 |
ttatctagcacattgtttcaaccaaatatt-atttacataccaaaatgagttcaagaaataatcataataatttgggatattcacaaaaaccttcagata |
128 |
Q |
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||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |
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| T |
15549873 |
ttatctagcacattgtttcaacctaatatttacttacataccaaaatgagttcaagaaataatcataataatttgggacattcacaaaaactttcagata |
15549774 |
T |
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| Q |
129 |
agaaggattcgagagatcctactaagaaaagtccaatctcaaaccagattgatatggcctacaacaatggt |
199 |
Q |
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| T |
15549773 |
agaaggattcgagagaccctgctaagaatagtccaatcttaaaccagaaggatttggcctacaacaatggt |
15549703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 366 - 477
Target Start/End: Complemental strand, 15586377 - 15586266
Alignment:
| Q |
366 |
taaatagaaagagatgtcatattaattttttagtaggtaaagtgataaacaccacgtagaactcaaacacaattacgagattttgggttccaaaacttag |
465 |
Q |
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| T |
15586377 |
taaataaaaagagatgtaatattagttttttagtcggtaaagtgataaatatctggtaaaactcaaacacaattacaaaattttgggttcgagaactcag |
15586278 |
T |
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| Q |
466 |
atgaagtgttct |
477 |
Q |
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|||||||||||| |
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| T |
15586277 |
atgaagtgttct |
15586266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 373 - 477
Target Start/End: Complemental strand, 15586920 - 15586816
Alignment:
| Q |
373 |
aaagagatgtcatattaattttttagtaggtaaagtgataaacaccacgtagaactcaaacacaattacgagattttgggttccaaaacttagatgaagt |
472 |
Q |
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|||||||||| || ||||| ||||||| |||||||||||||| |||||||| |||||||| |||||| || ||||||||||| | || | ||||||| | |
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| T |
15586920 |
aaagagatgtaatgttaatcttttagttggtaaagtgataaataccacgtaatactcaaactcaattatgaaattttgggttcgagaattcagatgaaat |
15586821 |
T |
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| Q |
473 |
gttct |
477 |
Q |
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||||| |
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| T |
15586820 |
gttct |
15586816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 10525417 - 10525453
Alignment:
| Q |
483 |
ataataaagaaatgtaaagcataaacttatatataaa |
519 |
Q |
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| T |
10525417 |
ataataaagaaatgtaaaacataaacttatatataaa |
10525453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1067 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold1067
Description:
Target: scaffold1067; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 479 - 519
Target Start/End: Original strand, 1970 - 2010
Alignment:
| Q |
479 |
actcataataaagaaatgtaaagcataaacttatatataaa |
519 |
Q |
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| T |
1970 |
actcataataaagaaatgtaaagcataaacttatatataaa |
2010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 519
Target Start/End: Complemental strand, 15743704 - 15743668
Alignment:
| Q |
483 |
ataataaagaaatgtaaagcataaacttatatataaa |
519 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
15743704 |
ataataaagaaatgtaaagcataaacttatatataaa |
15743668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 483 - 519
Target Start/End: Original strand, 1572607 - 1572643
Alignment:
| Q |
483 |
ataataaagaaatgtaaagcataaacttatatataaa |
519 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
1572607 |
ataataaagaaatgtaaagcataaacttatatataaa |
1572643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 605 - 637
Target Start/End: Complemental strand, 36228631 - 36228599
Alignment:
| Q |
605 |
gaacacttgaaattcttatgatttaagtactca |
637 |
Q |
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| T |
36228631 |
gaacatttgaaattcttatgatttaagtactca |
36228599 |
T |
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