View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_high_3 (Length: 594)
Name: NF17388_high_3
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_high_3 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 576
Target Start/End: Complemental strand, 26938983 - 26938418
Alignment:
| Q |
13 |
attctcaggccatttggacaatcttgttttgtttctcagattcttgtaagtttgcaagctttttctgttctt-gttttcatcaagatttaaatttcgcaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26938983 |
attctcaggccatttggacaatcttgttttgtttctcagattcttgtaagtttgcaagctttttctgttctttgttttcatcaagatttaaatttcgcaa |
26938884 |
T |
|
| Q |
112 |
tgccgtcccaatgcatgaagcaatgacatagacacggcaccaacactgatacacggacactagtaataatataagaaaattgaattagttgaatgtaatc |
211 |
Q |
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| T |
26938883 |
tgccgtcccaatgcatgaagcaatgacatagacacggcaccgacactgatacgtggacactagtaata-tataagaaagttgaattagttgaatgtaatc |
26938785 |
T |
|
| Q |
212 |
acttgtatt-ggtgtagtgtagagtctggccaatcaaaagtgttggtgctacagccaatagagatcgcaatccttgataatgtggataatcatggtcaaa |
310 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26938784 |
acttgtgttcggtgtagtgtagagtctggccaatcaaaagtgttggtgctacagccaatagagatcacaatccttgataatgtggataatcatggtcaaa |
26938685 |
T |
|
| Q |
311 |
tgtgactgaggcagtttcaactgcagtcatgttacattcgcagagacatcaaaaactttgatgtcgtggcccaaatagttgtgtgtttctaaaaacaacc |
410 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26938684 |
tgtgactgaggcagtttcaactgcaatcatgttacattcgcagagacatcaaaaactttgatgtagtggcccaaatagttgtgtgtttctaaaaacaacc |
26938585 |
T |
|
| Q |
411 |
ttgattttgattttaagatgccattttggtattgggtttttcattgattgtttatgtgtataaaatattgtatttgtttgtgatcacattatatcattct |
510 |
Q |
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| T |
26938584 |
ttgattttgattttaagatgccattttggtattgggtttttcattgattgtttatgtgtatagaatattgtatttgtttgtgatcacattatatcattct |
26938485 |
T |
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| Q |
511 |
tattgatgaaaatcttttacaacatta-ttaggtgaccgcattggcttgtcctccatagcaccattt |
576 |
Q |
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| T |
26938484 |
tattgatgaaaatcttttacaacattatttaggtgaccgcattggcttgtcctccatagcaccattt |
26938418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 398645 - 398700
Alignment:
| Q |
175 |
taataatataagaaaattgaattagttgaatgtaatcacttgtattggtgtagtgt |
230 |
Q |
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| T |
398645 |
taataatttaagaaaattgaagtaattgaatgtaaccacgtgtattggtgttgtgt |
398700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 230
Target Start/End: Original strand, 28322241 - 28322303
Alignment:
| Q |
167 |
gacactagtaataatataagaaaattgaattagttgaatgtaatcacttgtattggtgtagtgt |
230 |
Q |
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| T |
28322241 |
gacactagtgataatttgagaaaat-gaattaattgaatgtaatcacatgtgttggtgtagtgt |
28322303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 18029328 - 18029372
Alignment:
| Q |
175 |
taataatataagaaaattgaattagttgaatgtaatcacttgtat |
219 |
Q |
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| T |
18029328 |
taataatattagaaaattgaagtaattgaatgtagtcacttgtat |
18029372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 348 - 376
Target Start/End: Complemental strand, 4343588 - 4343560
Alignment:
| Q |
348 |
tcgcagagacatcaaaaactttgatgtcg |
376 |
Q |
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| T |
4343588 |
tcgcagagacatcaaaaactttgatgtcg |
4343560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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