View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17388_high_4 (Length: 575)

Name: NF17388_high_4
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17388_high_4
NF17388_high_4
[»] chr5 (4 HSPs)
chr5 (14-273)||(472114-472373)
chr5 (346-549)||(472446-472651)
chr5 (46-149)||(35106902-35107007)
chr5 (487-544)||(6804356-6804413)
[»] chr4 (1 HSPs)
chr4 (43-148)||(54453122-54453227)
[»] chr3 (1 HSPs)
chr3 (43-113)||(35459504-35459574)
[»] chr1 (2 HSPs)
chr1 (43-148)||(43317032-43317137)
chr1 (43-148)||(50950811-50950916)
[»] chr2 (2 HSPs)
chr2 (487-545)||(41768275-41768333)
chr2 (47-112)||(3148224-3148288)
[»] chr6 (2 HSPs)
chr6 (43-112)||(29291108-29291177)
chr6 (357-405)||(29290889-29290937)
[»] scaffold0150 (1 HSPs)
scaffold0150 (357-405)||(12438-12486)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 273
Target Start/End: Original strand, 472114 - 472373
Alignment:
Q  14 taggtgacatttaatatgggaaagacggcttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagacc 113  Q
    |||||||||||||||||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  472114 taggtgacatttaatatgggaaagactgcttgtttcccaccataggaaagttgtttttaaaccatcagattatatgatgaacatagctttatgatagacc 472213  T
Q  114 acccacgctagatttcttctgcaatcatattcatcctttcacacacctcaaaaacaatctcagtatcagtgttccattgttatcgttattttcttctcca 213  Q
    ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  472214 acctacactagatttcttctgcaatcatattcatcctttcacacacctcaaaaacaatctcagtatcagtgttccattgttatcgttattttcttctcca 472313  T
Q  214 aatgttcaactaatctctcttcaataatgattgtcannnnnnnacaataacatgtaccaa 273  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  472314 aatgttcaactaatctctcttcaataatgattgtcatttttttacaataacatgtaccaa 472373  T

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Target: chr5; HSP #2
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 346 - 549
Target Start/End: Original strand, 472446 - 472651
Alignment:
Q  346 aatttgaaaacccaccaaaaacttgttttatttccgtgttccattcattaattcataattatgttggattattttatttttataaaagaaaataatcatg 445  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  472446 aattggaaaacccaccaaaaacttgttttatttccttgttccattcattaattcataattatgttggcttattttatttttataaaagaaaataatcatg 472545  T
Q  446 aagtcaacatgaacccatattcatactgaa--cgttgaacaatccacacaataattaaatatcattgaataaaaaacaagagagaactcaagagtgaagg 543  Q
    ||||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  472546 aagtccacatgaacccatattcatattgaacccgttgaacaatccacacaataattaaatatcattgaataaaaaacaagagagaactcaagagtgaagg 472645  T
Q  544 gagtga 549  Q
    ||||||    
T  472646 gagtga 472651  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 35106902 - 35107007
Alignment:
Q  46 tttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagaccacccacgctagat--ttcttctgcaatcatat 143  Q
    ||||| ||||| | ||| || ||||| || |||||||| ||||||  | ||||||||||||||||||||| ||| ||||||  || ||||||||||||||    
T  35106902 tttcctatcatgggaaagttattttttaagcatcagatcatatgacaaccatagctttatgatagaccactcacactagattatttttctgcaatcatat 35107001  T
Q  144 tcatcc 149  Q
     |||||    
T  35107002 gcatcc 35107007  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 544
Target Start/End: Complemental strand, 6804413 - 6804356
Alignment:
Q  487 ccacacaataattaaatatcattgaataaaaaacaagagagaactcaagagtgaaggg 544  Q
    ||||||| |||||||| | | ||||||| ||||| |||||||||||| ||||||||||    
T  6804413 ccacacagtaattaaaaacccttgaatagaaaaccagagagaactcatgagtgaaggg 6804356  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 54453122 - 54453227
Alignment:
Q  43 ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagaccacccacgctagatttcttctgcaatcata 142  Q
    |||||||||||||| |||||||| ||||| ||||||||||| ||||||||| |||| |||||||||||||| ||||| ||||||   ||| |||||||||    
T  54453122 ttgtttcccatcatggaaaaattattttttaaccatcagatcatatgatgagcatatctttatgatagaccgcccacactagatcgtttccgcaatcata 54453221  T
Q  143 ttcatc 148  Q
    ||||||    
T  54453222 ttcatc 54453227  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 35459574 - 35459504
Alignment:
Q  43 ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagacc 113  Q
    ||||||| || |||||||||||| ||||| ||||||||||| ||||||||| |||| ||||||||||||||    
T  35459574 ttgtttctcaccatagaaaaattattttttaaccatcagatcatatgatgagcatatctttatgatagacc 35459504  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 43317137 - 43317032
Alignment:
Q  43 ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagcttt-atgatagaccacccacgctagatttcttctgcaatcat 141  Q
    |||||||||||||| | ||| || ||||| ||||||| ||| ||||||||| |||| |||| |||||||||| ||||| |||||||  ||||||||||||    
T  43317137 ttgtttcccatcatgggaaa-ttattttttaaccatcggatcatatgatgagcatatcttttatgatagaccgcccacactagattgtttctgcaatcat 43317039  T
Q  142 attcatc 148  Q
    |||||||    
T  43317038 attcatc 43317032  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 50950916 - 50950811
Alignment:
Q  43 ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagaccacccacgctagatttcttctgcaatcata 142  Q
    |||||||||| ||||| |||||| ||||| |||||||  || |||| |||| |||| |||||||||||||  ||||| |||||||  ||| |||||||||    
T  50950916 ttgtttcccaccataggaaaattattttttaaccatcgaatcatataatgagcatatctttatgatagactgcccacactagattgtttccgcaatcata 50950817  T
Q  143 ttcatc 148  Q
    ||||||    
T  50950816 ttcatc 50950811  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 487 - 545
Target Start/End: Complemental strand, 41768333 - 41768275
Alignment:
Q  487 ccacacaataattaaatatcattgaataaaaaacaagagagaactcaagagtgaaggga 545  Q
    ||||||| |||||||| ||| ||||||||||||| |||||||||||| |||||||||||    
T  41768333 ccacacagtaattaaaaatccttgaataaaaaactagagagaactcatgagtgaaggga 41768275  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 3148224 - 3148288
Alignment:
Q  47 ttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagac 112  Q
    |||||||||| ||||| |||||||||| ||||||||||| |||| | |||||| ||||| ||||||    
T  3148224 ttcccatcatggaaaagttgtttttaa-ccatcagattaaatgaagtacatagttttattatagac 3148288  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 112
Target Start/End: Complemental strand, 29291177 - 29291108
Alignment:
Q  43 ttgtttcccatcatagaaaaattgtttttaaaccatcagattatatgatgaacatagctttatgatagac 112  Q
    |||||||||||||||||||| || ||||| ||||||||||  ||||| ||  ||||||||||||||||||    
T  29291177 ttgtttcccatcatagaaaagttattttttaaccatcagaccatatggtgtgcatagctttatgatagac 29291108  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 29290937 - 29290889
Alignment:
Q  357 ccaccaaaaacttgttttatttccgtgttccattcattaattcataatt 405  Q
    ||||||||||||| ||||||| || |||||||||||||| || ||||||    
T  29290937 ccaccaaaaacttattttattcccttgttccattcattacttaataatt 29290889  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 12486 - 12438
Alignment:
Q  357 ccaccaaaaacttgttttatttccgtgttccattcattaattcataatt 405  Q
    ||||||||||||| |||||||||| |||| ||||||||| || ||||||    
T  12486 ccaccaaaaacttattttatttccttgtttcattcattacttaataatt 12438  T

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