View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_high_5 (Length: 515)
Name: NF17388_high_5
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 11412874 - 11413249
Alignment:
| Q |
11 |
cacaattttggtacgttctttcatcgattttgtggagcagaggtagttgacaaaggctatgatgcttgaattgataataacgtgggtaatgcttgaaaac |
110 |
Q |
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| T |
11412874 |
cacaattttggtatgttctttcatcgattttgtggagcagaggtagatgacaaaggctatgatgcttgaattgataaaaacgtgggtaatgcttgaaaac |
11412973 |
T |
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| Q |
111 |
tccataaaataaaatgacccatttttcgattttgctcctctgatacaaaaactactaactgtgacataatatgatttttattccatgtgactgatgataa |
210 |
Q |
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| T |
11412974 |
tccataaaacaaaatgacccatttttcgattttgttcctctgatacaaaaactactaactctgacataatatgatttttattccatgtgactgatgataa |
11413073 |
T |
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| Q |
211 |
gtggaaaaactatctaatgaattttatcaagaatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatattta |
310 |
Q |
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| T |
11413074 |
gtggaaaaactatctaatgaattttaccaagaatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatattta |
11413173 |
T |
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| Q |
311 |
acctattttttatttactatgcttattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagtatgat |
386 |
Q |
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| T |
11413174 |
acctattttttatttactatgcttattgtgcttatcattgacccgtgtgaagcacgggagcacgatttagtatgat |
11413249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 440 - 496
Target Start/End: Original strand, 11413327 - 11413383
Alignment:
| Q |
440 |
aatttggtgtgtattaagatacaatcccacctcttatattagactattacttttccc |
496 |
Q |
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| T |
11413327 |
aatttggtgtgtattaagatacaatcctacctcttatattagactattacttttccc |
11413383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 242 - 309
Target Start/End: Original strand, 34875102 - 34875169
Alignment:
| Q |
242 |
aatgttcgttaattaatgttattattacttatgtaatctcttaatcaagtttcaactatattatattt |
309 |
Q |
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| T |
34875102 |
aatgttcgttaattaatgttattattactcatgtaatgttgtaatgaaatttcaattatatcatattt |
34875169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 240 - 381
Target Start/End: Original strand, 20807390 - 20807538
Alignment:
| Q |
240 |
agaatgttcgttaattaatgttattatta---cttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttatttactatgct--- |
333 |
Q |
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| T |
20807390 |
agaatgttcgttaattaatgttattattattactcatgtgatgtcgtaatggagtttcaatagtattatatttaatgtgcttttaatttattatgctcat |
20807489 |
T |
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| Q |
334 |
-tattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagt |
381 |
Q |
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| T |
20807490 |
atattgtgctcatcattttcccgtgcgaagcacggttgcacaatctagt |
20807538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 15029151 - 15029102
Alignment:
| Q |
333 |
ttattgtgctcatcattgacccgtgtgaagcacgggagcacgatctagta |
382 |
Q |
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| T |
15029151 |
ttattgtgttcaccattgacccgtgcgaagcacgggagtgcgatctagta |
15029102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 326
Target Start/End: Complemental strand, 15598488 - 15598402
Alignment:
| Q |
243 |
atgttcgttaattaatgttatt---attacttatgtaatctcttaatcaagtttcaactatattatatttaacctattttttattta |
326 |
Q |
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| T |
15598488 |
atgttcgttaattaatgttattattattacttatgtgatgtcgtaatgaagtctcaaatgcattatatttaacatgtttttaattta |
15598402 |
T |
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