View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_high_6 (Length: 502)
Name: NF17388_high_6
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_high_6 |
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| [»] scaffold0041 (4 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 95882 - 95527
Alignment:
| Q |
19 |
ttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
118 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95882 |
ttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
95783 |
T |
|
| Q |
119 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatc |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95782 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatc |
95683 |
T |
|
| Q |
219 |
attatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaact |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
95682 |
attatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaact |
95583 |
T |
|
| Q |
319 |
ctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
374 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95582 |
ctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
95527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 374
Target Start/End: Complemental strand, 87866 - 87511
Alignment:
| Q |
19 |
ttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
118 |
Q |
| |
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||||| |||||||||||||||||| | || |||||| |||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||| |
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| T |
87866 |
ttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaag |
87767 |
T |
|
| Q |
119 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
87766 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatc |
87667 |
T |
|
| Q |
219 |
attatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaact |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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| T |
87666 |
attatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaact |
87567 |
T |
|
| Q |
319 |
ctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
374 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |
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|
| T |
87566 |
ctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcaca |
87511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 375 - 444
Target Start/End: Complemental strand, 87474 - 87405
Alignment:
| Q |
375 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
444 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
87474 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
87405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 95490 - 95440
Alignment:
| Q |
375 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
425 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
95490 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
95440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 40870400 - 40870755
Alignment:
| Q |
19 |
ttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870400 |
ttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
40870499 |
T |
|
| Q |
119 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40870500 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatc |
40870599 |
T |
|
| Q |
219 |
attatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaact |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
40870600 |
attatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatatcttcaact |
40870699 |
T |
|
| Q |
319 |
ctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40870700 |
ctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
40870755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 374
Target Start/End: Original strand, 40878417 - 40878772
Alignment:
| Q |
19 |
ttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
118 |
Q |
| |
|
||||| |||||||||||||||||| | || |||||| |||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||| |
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|
| T |
40878417 |
ttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaag |
40878516 |
T |
|
| Q |
119 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878517 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttgtttcggacacgttgatgccagcaacaccatc |
40878616 |
T |
|
| Q |
219 |
attatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatctcatatcttcaact |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
40878617 |
attatcaaaactaacctggttaatattcatagggacaagtctgagttttgcatacacttcatcggtctcatgattagccatatatcttatagcttcaact |
40878716 |
T |
|
| Q |
319 |
ctacatggaatgaaagatggaattttggagtaagcactgaaattcaccggctcaca |
374 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |
|
|
| T |
40878717 |
ctacatggaatgaaagacggaattttggagtaagaactgaaattcacaggctcaca |
40878772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 375 - 444
Target Start/End: Original strand, 40878809 - 40878878
Alignment:
| Q |
375 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgccatagctgagggtccacactc |
444 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
40878809 |
ctgtgagttaacttctggcatttgaaccattcctcctgcaacggcatgccatagctgagggtccacactc |
40878878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 40870792 - 40870842
Alignment:
| Q |
375 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870792 |
ctgtgagttaacttctggcatttgcaccattcctcctgcaatggcatgcca |
40870842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
| Q |
82 |
cgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
171 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||| ||| || || |||||||||||||||||||| |||||||| || || ||||||||| |
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|
| T |
40352688 |
cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
| Q |
76 |
tccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaa |
155 |
Q |
| |
|
|||| |||||| |||||| | || |||||||| |||||| |||||| || ||||||||||| ||||||||||| ||||| |
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|
| T |
28346823 |
tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa |
28346744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 42730210 - 42730140
Alignment:
| Q |
100 |
gcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
170 |
Q |
| |
|
||||| ||||||||| |||||| || ||||| |||||||||||||||||||| || || || |||||||| |
|
|
| T |
42730210 |
gcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga |
42730140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
| Q |
117 |
agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
171 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
21715696 |
agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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