View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_high_9 (Length: 371)
Name: NF17388_high_9
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 41520087 - 41519817
Alignment:
| Q |
6 |
agcagcacagagtgtggaacattaaggtttgcttgcaaaacgatgatggaaaattaaggagcagtgtatgtatttttgggtgttagagtagaattgaagt |
105 |
Q |
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| T |
41520087 |
agcaacacaaagtgtggaacattaaggtttgcttgcaaaacgatgatggaaaattaaggagcagtgtatgtatttttgggtgttagagtagaattgaagt |
41519988 |
T |
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| Q |
106 |
gtgtttcaactgtatactatcactttgttttatgaagatgatactccctcctcaccacaatatatcacattggccttgtgttttatgaagaagacaacac |
205 |
Q |
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| T |
41519987 |
gtgtttcaactgtatactatcactttgttttatgaagatgatactccctcctcaccacaatatatcacattggccttgtgttttatgaagaagacaacac |
41519888 |
T |
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| Q |
206 |
aagtttgtgcaggccaaaccaagtttaatacattattttaaggaataaatcttaatacatgacaagtaagg |
276 |
Q |
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| T |
41519887 |
aagtttgtgcaggccaaaccaagtttaatacattattttaaggaataaatcttaatacatgacaagtaagg |
41519817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 11 - 170
Target Start/End: Complemental strand, 41510386 - 41510226
Alignment:
| Q |
11 |
cacagagtgtggaacattaaggtttgcttgcaaaacgatgat-ggaaaattaaggagcagtgtatgtatttttgggtgttagagtagaattgaagtgtgt |
109 |
Q |
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| T |
41510386 |
cacaaagtgtggaacattaatgtttgcttgcaaaaccatggttggaaaattaatgagtagtgtatgtacttttgggtgttagagttgaattgaagcgtgt |
41510287 |
T |
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| Q |
110 |
ttcaactgtatactatcactttgttttatgaagatgatactccctcctcaccacaatatat |
170 |
Q |
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| T |
41510286 |
ttcaattgtataatatcactttgttttatgaagatgatacttcctccacaactcaatatat |
41510226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 41519788 - 41519738
Alignment:
| Q |
305 |
agcagattcaaatttaataaggttgacggcgatatatatgtactattgttcc |
356 |
Q |
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| T |
41519788 |
agcagattcaaatttagtaaggttgacgacgatatatatgta-tattgttcc |
41519738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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