View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_low_1 (Length: 834)
Name: NF17388_low_1
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 16 - 634
Target Start/End: Complemental strand, 23891865 - 23891248
Alignment:
| Q |
16 |
acagatcatcaaaattggagtcaaagtcttctatcttcgttttgaataaatacaggaggttnnnnnnnn---tcttttgaaccttctgatgtcaatttcc |
112 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |
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| T |
23891865 |
acagatcatcaaaattggagtcatagtcttctatcttcgttttgaataaataccggaggttaaaaaaaaatatcttttgaaccttctaatgtcaatttcc |
23891766 |
T |
|
| Q |
113 |
atccaattttaaatannnnnnnaacctcacacatttacctctaatgaagtcaattctcatataccnnnnnnnnnnnn-gcatcaaaatgttaagaaactt |
211 |
Q |
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| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
23891765 |
acccaattttaaatatttttttaacctcacacatttacctctaatgaagtcaattctcatataccaaaaaaataaaaagcatcaaaatgttaagaaacct |
23891666 |
T |
|
| Q |
212 |
ccaattccaattatattagaaaatagagaagttgcgaactcttgccactgtaccactatctttctctcttcattatttttctaagcttaagttgtagaat |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
23891665 |
-----tccaattatattagaaaatagagaagttgcgaactcttgccactgtaccactatctttctatcttcattatttttctaagcttaagttgtaggat |
23891571 |
T |
|
| Q |
312 |
atgagtatgagtatgaataaaaaatggaataatcatttttcaaattggatagcctacatattacaataataagcaccaagtaagaaaaatagaaaatcga |
411 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23891570 |
atgagtatgagtatgaataaaaaaaggaataatcattgttcaaattgggtagcctacatatttcaataataagcaccaagtaagaaaaatagaaaatcga |
23891471 |
T |
|
| Q |
412 |
gcaaatgattgtcaatatgacacaatgctataatcaaacatgtgacaacacagtagcttctgcgaagctaaaattaattttagactgatgaagtgagtta |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23891470 |
gcaaatgattgtcaatatgacacaatgctataatcaaacatgtgacaacacagtagcttctgcgaagctaaaattaattttagactgatgaagtgagtta |
23891371 |
T |
|
| Q |
512 |
tacaattactttcccaaatttcaaaacttgcattactttgtaggtgtcataaaaaatttgtataaatttttgtgtggttaaatgtagagtgacaatccta |
611 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23891370 |
tacaattactttcccaaatttcaaaacttgcattactttgtaggtgtcataaaaaatttgtataaatttttgtgtggttaaatgtagagtgacaatccta |
23891271 |
T |
|
| Q |
612 |
taaatgtgactaagatataacct |
634 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
23891270 |
taaatgtgactaagatataacct |
23891248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 698 - 819
Target Start/End: Complemental strand, 23891184 - 23891063
Alignment:
| Q |
698 |
tatactttagaacaaagattaattattctaataatcttgactttgataaaaagatctaatctttttcaaaattttcaagagttgcaatacaaatatgacc |
797 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23891184 |
tatacgttagaacaaagattaattattctaataatcttgactttgataaaaagatctaatctttttcaaaattttcaagagttgcaatacaaatatgacc |
23891085 |
T |
|
| Q |
798 |
ggtgcctttgtagcatcaaact |
819 |
Q |
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|||||||||||||||||||||| |
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| T |
23891084 |
ggtgcctttgtagcatcaaact |
23891063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Complemental strand, 30801572 - 30801536
Alignment:
| Q |
16 |
acagatcatcaaaattggagtcaaagtcttctatctt |
52 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
30801572 |
acagatcatcaaaattggagtcatagtcttctatctt |
30801536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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