View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17388_low_11 (Length: 361)
Name: NF17388_low_11
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 347
Target Start/End: Complemental strand, 34884263 - 34883917
Alignment:
| Q |
1 |
atcatttagtgttgcttaacnnnnnnncttctaatctacatattacatgtatatatcatttcaaaaggctttgtacagtacagtatacaaaatgagtggc |
100 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34884263 |
atcatctagtgttgcttaactttttttcttctaatctacatattacatgtaaatatcatttcaaaaggctttgtacagtacagtatacaaaatgagtggc |
34884164 |
T |
|
| Q |
101 |
tgttgacatgaggcattgaagaattaaatttaggatatactcctagttctggagatattttagtgttgggatttcagtaataatcatcgttgacataatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34884163 |
tgttgacatgaggcattgaagaattaaatttaggatatactcctagttctggagatattttagtgttgggatttcagtaataatcatcgttgacataatg |
34884064 |
T |
|
| Q |
201 |
tgaaaaatgttaagaaaagggaaaattgtaatgataggctaatcacaatattatgctctaaatcaaaatggatccaggcagcatagctataataatttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34884063 |
tgaaaaatgttaagaaaagggaaaattgtaatgataggctaatcacaatattatgctctaaatcaaaatggatccaggcagcatagctataataatttgt |
34883964 |
T |
|
| Q |
301 |
gtgtgtgcatggttagagcagtttttgcttatttttacctcattatt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34883963 |
gtgtgtgcatggttagagcagtttttgcttatttttacctcattatt |
34883917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University