View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17388_low_12 (Length: 309)
Name: NF17388_low_12
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 6819326 - 6819601
Alignment:
| Q |
12 |
agagacatggccaaagttctaatttttgtattagttttactccaagtaagctctttggcagtgtttgctaaagagtttaatactcctcactaccttcctc |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6819326 |
agagacatggccaaagtcctaatttttgtattagttttactccaagtaagctctttggcagtgtttgctaaagagtttaatactcctcactaccttcctc |
6819425 |
T |
|
| Q |
112 |
gccaacacccaccaaccccaacccctgctcctgttgaaccaccttattcctcctttattcaatctctcagtctagaccagtctcacattgattaccacca |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6819426 |
gccaacacccaccaaccccaacccctgctcctgttgaaccaccatattcctcctttcttcaatctctcagtctagaccagtctcacattgattaccacca |
6819525 |
T |
|
| Q |
212 |
ccatcctcttcctcacccatcaccccttcctccttttaaacaaccatcttcttcccatattcaatctctcagtcta |
287 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6819526 |
ccatcctcttcctcacccatcaccccttcctccttttaaacaaccatcttcttcccatattcaatctctcagtcta |
6819601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 167 - 291
Target Start/End: Original strand, 6819583 - 6819707
Alignment:
| Q |
167 |
tattcaatctctcagtctagaccagtctcacattgattaccaccaccatcctcttcctcacccatcaccccttcctccttttaaacaaccatcttcttcc |
266 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
6819583 |
tattcaatctctcagtctagaccactctcacattgattaccactaccatcctcttcctcatccatcaccccttcctccttttcaaccaccatcttcttcc |
6819682 |
T |
|
| Q |
267 |
catattcaatctctcagtctaaatc |
291 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
6819683 |
catattcaatctctcagtctaaatc |
6819707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 6819685 - 6819753
Alignment:
| Q |
167 |
tattcaatctctcagtctagaccagtctcacattgattaccaccaccatcctcttcctcacccatcacc |
235 |
Q |
| |
|
||||||||||||||||||| | || ||||||||||||||||| |||||||||| || ||||||||||| |
|
|
| T |
6819685 |
tattcaatctctcagtctaaatcatcctcacattgattaccactaccatcctctcccacacccatcacc |
6819753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University