View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_low_13 (Length: 296)
Name: NF17388_low_13
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 472628 - 472882
Alignment:
| Q |
19 |
agaactcaagagtgaagggagtgacttgtgtagatctaagttaaaattaaatttttgttccgaaaaactaaaattgaactcattcattttcctataattt |
118 |
Q |
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| T |
472628 |
agaactcaagagtgaagggagtgacttgtgtagatctaagttaaaattgaatttttgttccgaaaaactaaaactgaactcattcattttcctataattt |
472727 |
T |
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| Q |
119 |
acaaattgtgagcttcgttaaggaacacaaactaaaatcaatggtcaatttagagaaaaatagtgacccatttgtcactgaaacttgaattnnnnnnnta |
218 |
Q |
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| T |
472728 |
acaaactgtgagctttgttaaggaacacaaactaaaattaatggtcaatttagagaaaaatagtgacccatttgtcactgaaacttgaattaaaaaaata |
472827 |
T |
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| Q |
219 |
tagagagaataaaatgttgagagcactgtgtgattcaaggctgttgaaataatat |
273 |
Q |
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| T |
472828 |
tagagagaataaaatgttgagagcactgtgtgattcaaggctgttgaaataatat |
472882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 6804262 - 6804208
Alignment:
| Q |
153 |
aaatcaatggtcaatttagagaaaaatagtgacccatttgtcactgaaacttgaa |
207 |
Q |
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| T |
6804262 |
aaatcgatgttcaagttagagaaaaatagagacccatttgtcaccaaaacttgaa |
6804208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 106 - 273
Target Start/End: Original strand, 44541374 - 44541546
Alignment:
| Q |
106 |
tttcctataatttacaaattgtgagcttcgttaaggaacacaaactaaaatcaatggtcaatttagagaaaaatagtgacccatttgtcactgaaacttg |
205 |
Q |
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| T |
44541374 |
tttcctataaattaaaaactgtgagtttcattaaggaacacaaactaaaatcaatggtcaatttagagaaaaatagtgacccatttgtcactgaaacttg |
44541473 |
T |
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| Q |
206 |
aattnnnnnnntat----agagagaataaaatgttgagagcac--tgtgtgattcaaggctgttgaaataatat |
273 |
Q |
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| T |
44541474 |
aattaaaaaaatatggaaagagagaataaaatgttaggagcactttgtgtgattcaa-gctgttgaaatgatat |
44541546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 207
Target Start/End: Complemental strand, 41768189 - 41768135
Alignment:
| Q |
153 |
aaatcaatggtcaatttagagaaaaatagtgacccatttgtcactgaaacttgaa |
207 |
Q |
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| T |
41768189 |
aaatcgatgttcaatttagagaaaaatagagactcatttgtcaccaaaacttgaa |
41768135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 38009497 - 38009441
Alignment:
| Q |
141 |
gaacacaaactaaaatcaatggtcaatttagagaaaaatagtgacccatttgtcact |
197 |
Q |
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| T |
38009497 |
gaacacaaaccaaaactaatcttcaatttatagaaaaataatgacccatttgtcact |
38009441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 2687442 - 2687498
Alignment:
| Q |
141 |
gaacacaaactaaaatcaatggtcaatttagagaaaaatagtgacccatttgtcact |
197 |
Q |
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| T |
2687442 |
gaacacaaaccaaaactaatcttcaatttatagaaaaataatgacccatttgtcact |
2687498 |
T |
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