View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_low_14 (Length: 250)
Name: NF17388_low_14
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 31458170 - 31458407
Alignment:
| Q |
1 |
ttaagacttgtttaaacaatacctgtgcagattcttagaagaaacaaattgtgttgggatgtgtattaatctctgcaaaatgccatctcaattgttcata |
100 |
Q |
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| T |
31458170 |
ttaagacttgtttaaacaatacctgtgcagattcttagaagaaacaaattgtgttgggatgtgtattaatctctgcaaaatgccatctcaattgttcata |
31458269 |
T |
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| Q |
101 |
aaggactcgtttggtatgccagtcaacatggtcccaagtaagcatttccatcaatattttcatggtcataaattcataaataagtacagttcnnnnnnnn |
200 |
Q |
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| T |
31458270 |
aaggactcgtttggtatgccagtcaacatggtcccaagtaagcattcccatcaatattttcatggtcataaattcataaataagtacagttc---ttttt |
31458366 |
T |
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| Q |
201 |
nnnnnnaaggaataaataagtacagttctatctacctttgc |
241 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31458367 |
tttttgaaggaataaataagtacagttctatctacctttgc |
31458407 |
T |
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Back To:
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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 38464001 - 38463903
Alignment:
| Q |
44 |
acaaattgtgttgggatgtgtattaatctctgcaaaatgccatctcaattgttcataaaggactcgtttggtatgccagtcaacatggtcccaagtaag |
142 |
Q |
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| T |
38464001 |
acaaattgtgtagggatgtgcgttaatatgtgcaaacttccaactcaatcgtttataaagaacaccctgggtatgccagtcaacatggtaccaagtaag |
38463903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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