View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17388_low_16 (Length: 237)

Name: NF17388_low_16
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17388_low_16
NF17388_low_16
[»] chr1 (2 HSPs)
chr1 (4-222)||(31457944-31458163)
chr1 (3-220)||(31467840-31468060)


Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 31458163 - 31457944
Alignment:
Q  4 ggaggagtagatttgtgatgttgcttgggtgaaatgattaattagaagctaatatgattgagctaattaatattttaataaatgaatcaatgtgttacat 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31458163 ggaggagtagatttgtgatgttgcttgggtgaaatgattaattagaagctaatatgattgagctaattaatattttaataaatgaatcaatgtgttacat 31458064  T
Q  104 gtgttttgttttggtagaaaatgtgtta-aagtgtttctcgtcattagaataatggatgtaaatagaaaaatgatttggtattggcaattactttgataa 202  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31458063 gtgttttgttttggtagaaaatgtgttacatgtgtttctcatcattagaataatggatgtaaatagaaaaatgatttggtattggcaattactttgataa 31457964  T
Q  203 agatcataaatcatgatagt 222  Q
     |||||||||||||||||||    
T  31457963 tgatcataaatcatgatagt 31457944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 31468060 - 31467840
Alignment:
Q  3 tggaggagtagatttgtgatgttgcttgggtgaaatgattaattagaagctaatatgattgagctaattaatattttaataaatgaatcaatgtgttaca 102  Q
    |||||||| |||| | || |||||||| ||||||||||||| |||||||||||||||||||||||||   || ||||  |||||||||||||||||| ||    
T  31468060 tggaggagaagatctttgttgttgcttaggtgaaatgattagttagaagctaatatgattgagctaa---attttttgttaaatgaatcaatgtgttgca 31467964  T
Q  103 tgtgt-----tttgttttggtagaaaatgtgtta-aagtgtttctcgtcattagaataatggatgtaaatagaaaaatgatttggtattggcaattactt 196  Q
    |||||     ||| |||||||||||||||||||| ||||||||||| |||||||||||||  |||||||||| |||||||||||||||||||||| ||||    
T  31467963 tgtgtgttttttttttttggtagaaaatgtgttacaagtgtttctcatcattagaataataaatgtaaatagtaaaatgatttggtattggcaataactt 31467864  T
Q  197 tgataaagatcataaatcatgata 220  Q
    |||||| |||||||||||||||||    
T  31467863 tgataatgatcataaatcatgata 31467840  T

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