View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17388_low_17 (Length: 204)
Name: NF17388_low_17
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_low_17 |
 | |
|
| [»] scaffold0041 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0041 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 95882 - 95714
Alignment:
| Q |
19 |
ttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95882 |
ttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
95783 |
T |
|
| Q |
119 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
95782 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
95714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 87866 - 87698
Alignment:
| Q |
19 |
ttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
118 |
Q |
| |
|
||||| |||||||||||||||||| | || |||||| |||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
87866 |
ttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaag |
87767 |
T |
|
| Q |
119 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
87766 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
87698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 40870400 - 40870568
Alignment:
| Q |
19 |
ttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
118 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870400 |
ttttcaccatgaacatccttgggatatatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
40870499 |
T |
|
| Q |
119 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40870500 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
40870568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 40878417 - 40878585
Alignment:
| Q |
19 |
ttttcaccatgaacatccttgggatagatgccctgaaaaggagggttacctgaatagtccatacgaggaaaaatcatttctgcacaatatctaggacaag |
118 |
Q |
| |
|
||||| |||||||||||||||||| | || |||||| |||||||||| |||||||||||| ||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
40878417 |
ttttcgccatgaacatccttgggaaaaatatcctgaagaggagggttagctgaatagtccaaacgaggaaaaagcgtttctgcacaatatctaggacaag |
40878516 |
T |
|
| Q |
119 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40878517 |
aaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagattgatgtttatcctttg |
40878585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 171
Target Start/End: Original strand, 40352688 - 40352777
Alignment:
| Q |
82 |
cgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
171 |
Q |
| |
|
|||||||||||| |||| ||||| ||||||||| ||| || || |||||||||||||||||||| |||||||| || || ||||||||| |
|
|
| T |
40352688 |
cgaggaaaaatcgtttcagcacagtatctaggaacagagaaccctccaccattgtttgcatcagactgtgtcaaagtctttgcaaaagat |
40352777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 76 - 155
Target Start/End: Complemental strand, 28346823 - 28346744
Alignment:
| Q |
76 |
tccatacgaggaaaaatcatttctgcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaa |
155 |
Q |
| |
|
|||| |||||| |||||| | || |||||||| |||||| |||||| || ||||||||||| ||||||||||| ||||| |
|
|
| T |
28346823 |
tccaaacgagggaaaatcgtctcggcacaatacctaggaacagaaaaacctccaccattgttagcatcagattgagtcaa |
28346744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 42730210 - 42730140
Alignment:
| Q |
100 |
gcacaatatctaggacaagaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaaga |
170 |
Q |
| |
|
||||| ||||||||| |||||| || ||||| |||||||||||||||||||| || || || |||||||| |
|
|
| T |
42730210 |
gcacagtatctaggaacagaaaaacctccaccgttgtttgcatcagattgtgttaatgtctttgcaaaaga |
42730140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 21715696 - 21715642
Alignment:
| Q |
117 |
agaaaagccaccaccattgtttgcatcagattgtgtcaaggttttcgcaaaagat |
171 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||||| || || ||||||||| |
|
|
| T |
21715696 |
agaaaaccccccaccattgtttgcatcagattgagtcaaagtcttagcaaaagat |
21715642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University