View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17388_low_7 (Length: 446)
Name: NF17388_low_7
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17388_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Original strand, 39275596 - 39276007
Alignment:
| Q |
16 |
catgatgattgaatggcctaacaccaccaccatgatgaggtgagtgagtgttggtagcaccaaaagggaatttttggccattgccattgccatggccatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39275596 |
catgatgattgaatggcctaacaccaccaccatgatgaggtgagtgtttgttggtagcaccaaaagggaatttttggcca------ttgccatggccatg |
39275689 |
T |
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| Q |
116 |
gttgttgttaccaaagccatgtccattagacatgctatcctgatgaaacatgttgtggtttcctcctatattggagccatggccatgatgttttgaaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39275690 |
gttgttgttaccaaagccatgtccattagacatgctatcctgatgaaacatgttgtggtttcctcctatattggagccatggccatgatgttttgaaaaa |
39275789 |
T |
|
| Q |
216 |
gagtgatcagattctttgccaaaaccacctggcttcgtgtgcatggcagggagtggaaattgttgcttatcgtagtagttgctatggtcagtggtataag |
315 |
Q |
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| T |
39275790 |
gaatgatcagattctttgccaaaaccacctggcttcatgtgcatggcagggagtggaaattgttgcttatcgtagtagttgctatggtcagtggtataag |
39275889 |
T |
|
| Q |
316 |
aatcttgatggaaaccatggctttgctgttgttgagccttagcttccatccacatgccatcttcaccatagcattgctgttgtggatatccaaggaactt |
415 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39275890 |
aatcttgatggaaaccatggctctgctgttgttgagccttagcttccatccacatgccatcttcaccatagcattgctgttgtggatatccaaggaactt |
39275989 |
T |
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| Q |
416 |
cccttgcatcttgttttt |
433 |
Q |
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|||||||||||||||||| |
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| T |
39275990 |
cccttgcatcttgttttt |
39276007 |
T |
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