View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17388_low_8 (Length: 428)

Name: NF17388_low_8
Description: NF17388
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17388_low_8
NF17388_low_8
[»] chr3 (15 HSPs)
chr3 (18-420)||(47212202-47212604)
chr3 (20-330)||(26713793-26714103)
chr3 (20-330)||(26737029-26737339)
chr3 (20-330)||(26698641-26698951)
chr3 (20-318)||(26733804-26734102)
chr3 (20-330)||(26744040-26744350)
chr3 (203-330)||(26751148-26751275)
chr3 (203-307)||(26690365-26690469)
chr3 (203-307)||(26731676-26731780)
chr3 (205-307)||(26694526-26694628)
chr3 (71-138)||(47193571-47193638)
chr3 (68-120)||(26675477-26675529)
chr3 (68-120)||(26690552-26690604)
chr3 (68-120)||(26694713-26694765)
chr3 (68-120)||(26731863-26731915)
[»] chr7 (9 HSPs)
chr7 (20-408)||(29212966-29213357)
chr7 (203-351)||(21130581-21130729)
chr7 (53-307)||(21108146-21108400)
chr7 (203-351)||(18658743-18658891)
chr7 (203-307)||(21098527-21098631)
chr7 (203-351)||(21111621-21111769)
chr7 (20-129)||(21123264-21123373)
chr7 (53-129)||(18658587-18658663)
chr7 (53-120)||(21130425-21130492)
[»] chr4 (1 HSPs)
chr4 (44-129)||(39132235-39132320)
[»] chr1 (1 HSPs)
chr1 (65-120)||(11791091-11791146)


Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 47212202 - 47212604
Alignment:
Q  18 tcgacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47212202 tcgacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttc 47212301  T
Q  118 atggatataagccaaaccttttgcagtgcctaaagctatgccaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccatta 217  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47212302 atggatataagccaaaccttttgcagtgcctaaagctatgtcaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccatta 47212401  T
Q  218 tccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttactt 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47212402 tccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacatttcaatcaaattcatgtggttaagctttccaatgctgcttactt 47212501  T
Q  318 ctgcgagaaactcttcttcgccttgatttgcttccttgagtctcttcaccgcgacaactcgttgatccaacaatacacctttgtaaacaattcctcctgc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47212502 ctgcgagaaactcttcttcgccttgatttgcttccttgagtctcttcaccgcgacaactcgttgatccaacaatacacctttgtaaacaattcctcctgc 47212601  T
Q  418 gcc 420  Q
    |||    
T  47212602 gcc 47212604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 26713793 - 26714103
Alignment:
Q  20 gacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat 119  Q
    |||||||||||||||| || ||| ||| |||||| | | || | ||| |||||||| ||||| | ||| |||||||||||||||||||||||||||||||    
T  26713793 gacaaaccaaaatctgcaaccttaggtcgataatcatagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcat 26713892  T
Q  120 ggatataagccaaaccttttgcagtgcctaaagctatgccaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccattatc 219  Q
    | | |||||| | || ||||||||| |||| ||| || ||| |||| ||||||||||| | || ||| ||    | ||  || ||||||| |||||| ||    
T  26713893 gtaaataagcaagacattttgcagttcctatagcaataccatatctctttccccaatcaagttcatttgataagagattatcagctaaagtaccattttc 26713992  T
Q  220 catgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttct 319  Q
    |||| ||||||| || | || | ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||||    
T  26713993 catgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaatcaaattcatgtggttaagccttccaatgatgctaacttct 26714092  T
Q  320 gcgagaaactc 330  Q
    || ||||||||    
T  26714093 gcaagaaactc 26714103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 26737029 - 26737339
Alignment:
Q  20 gacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat 119  Q
    |||||||||||||||| || ||| ||| |||||| ||| || | ||| |||||||| ||||| | ||| |||||||||||||||||||||||||||||||    
T  26737029 gacaaaccaaaatctgcaaccttaggtcgataatcagagtcaacaagtatgttttgcggctttatatcgcaatgcaaaatccactccaaacactcttcat 26737128  T
Q  120 ggatataagccaaaccttttgcagtgcctaaagctatgccaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccattatc 219  Q
    | | |||||| | || ||||||||| |||| ||| || ||| |||| ||||||||||| | || ||| ||    | ||  || ||||||| |||||| ||    
T  26737129 gtaaataagcaagacattttgcagttcctatagcaataccatatctctttccccaatcaagttcatttgatgagagattatcagctaaagtaccattttc 26737228  T
Q  220 catgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttct 319  Q
    |||| ||||||| || | || | ||||||||||||| |||||||||||||||||| |||| |||||||||||||||||| |||||||| |||| ||||||    
T  26737229 catgtactcataaaccaacaatttatgttttccctcagcacaataaccccacattccaattaaattcatgtggttaagccttccaatgatgctaacttct 26737328  T
Q  320 gcgagaaactc 330  Q
    || ||||||||    
T  26737329 gcaagaaactc 26737339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 26698641 - 26698951
Alignment:
Q  20 gacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat 119  Q
    ||||||||||||||||  | ||| ||||||||||  || || | ||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| |    
T  26698641 gacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttcgt 26698740  T
Q  120 ggatataagccaaaccttttgcagtgcctaaagctatgccaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccattatc 219  Q
    | | |||||| | ||| |||||||| || | ||| |||  | | ||||| |||||||| | || | | ||    | ||  || ||||||| |||||| ||    
T  26698741 gtaaataagcaagaccctttgcagttcccatagcaatgttataccttttaccccaatcaagttcacttgatgagagattatcagctaaagtaccattttc 26698840  T
Q  220 catgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttct 319  Q
    |||| ||||||| || | || ||| ||||||||||| |||||||||||||||||| | |||||||||||||| |||||| |||||||| |||| |||||     
T  26698841 catgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttca 26698940  T
Q  320 gcgagaaactc 330  Q
    || ||||||||    
T  26698941 gcaagaaactc 26698951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 26733804 - 26734102
Alignment:
Q  20 gacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat 119  Q
    ||||||||||||||||  | ||| ||||||||||  || || | ||| |||||||||||||| | ||| ||||||||||||||||||||||||||||| |    
T  26733804 gacaaaccaaaatctgctaccttaggttgataatccgagtcaacaagtatgttttgtggctttatatcgcaatgcaaaatccactccaaacactcttcgt 26733903  T
Q  120 ggatataagccaaaccttttgcagtgcctaaagctatgccaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccattatc 219  Q
    | | |||||| | ||| |||||||| || | ||| |||  | | ||||| |||||||| | || | | ||    | ||  || ||||||| |||||| ||    
T  26733904 gtaaataagcaagaccctttgcagttcccatagcaatgttataccttttaccccaatcaagttcacttgatgagagattatcagctaaagtaccattttc 26734003  T
Q  220 catgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttc 318  Q
    |||| ||||||| || | || ||| ||||||||||| |||||||||||||||||| | |||||||||||||| |||||| |||||||| |||| |||||    
T  26734004 catgtactcataaaccaacaatctgtgttttccctcggcacaataaccccacattcctatcaaattcatgtgattaagccttccaatgatgctaacttc 26734102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 330
Target Start/End: Original strand, 26744040 - 26744350
Alignment:
Q  20 gacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat 119  Q
    |||||||||||||| |  | ||| ||||| |||| ||| || | ||| |||||||| ||||| | ||||||||||||||||||||||||||| ||||| |    
T  26744040 gacaaaccaaaatccgctaccttcggttggtaatcagagtcaacaagtatgttttgcggctttatatcacaatgcaaaatccactccaaacattcttcgt 26744139  T
Q  120 ggatataagccaaaccttttgcagtgcctaaagctatgccaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccattatc 219  Q
    | | |||||| |  || |||||||| || | ||| |||  | | ||||| | |||||| | |||||| ||    | ||  || ||||||| ||| || ||    
T  26744140 gtaaataagcaaggccctttgcagttcccatagcaatgttataccttttactccaatcaagtttatttgatgaaagattatcggctaaagtaccgttttc 26744239  T
Q  220 catgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatgctgcttacttct 319  Q
    |||| |||| || || | || ||||||||||||||| |||||||| ||||||||  |||| || ||||||||||||||| |||||||| ||||||||||     
T  26744240 catgcactcgtaaaccaacaatctatgttttccctcagcacaatagccccacataccaattaagttcatgtggttaagccttccaatgatgcttacttca 26744339  T
Q  320 gcgagaaactc 330  Q
    || ||||||||    
T  26744340 gcaagaaactc 26744350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 203 - 330
Target Start/End: Original strand, 26751148 - 26751275
Alignment:
Q  203 gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttc 302  Q
    ||||||| ||| || |||||| ||||||| || | || |||||| |||||||| |||||||||||||||||  ||||||||||||||||||||||| |||    
T  26751148 gctaaagtacccttttccatgtactcataaaccaacaatctatgctttccctcagcacaataaccccacataccaatcaaattcatgtggttaagccttc 26751247  T
Q  303 caatgctgcttacttctgcgagaaactc 330  Q
    ||||| |||| ||||| || ||||||||    
T  26751248 caatgatgctaacttcggcaagaaactc 26751275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 26690469 - 26690365
Alignment:
Q  203 gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttc 302  Q
    ||||||||||| || |||||| ||||| | || | || ||| |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||    
T  26690469 gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc 26690370  T
Q  303 caatg 307  Q
    |||||    
T  26690369 caatg 26690365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 26731780 - 26731676
Alignment:
Q  203 gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttc 302  Q
    ||||||||||| || |||||| ||||| | || | || ||| |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||    
T  26731780 gctaaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttc 26731681  T
Q  303 caatg 307  Q
    |||||    
T  26731680 caatg 26731676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 205 - 307
Target Start/End: Complemental strand, 26694628 - 26694526
Alignment:
Q  205 taaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttcca 304  Q
    ||||||||| || |||||| ||||| | || | || ||| |||||||||||||||||||| ||||||||  ||||||||||||||||||||||| |||||    
T  26694628 taaagaacctttttccatgtactcaaaaactaacaatctgtgttttccctctgcacaatacccccacataccaatcaaattcatgtggttaagccttcca 26694529  T
Q  305 atg 307  Q
    |||    
T  26694528 atg 26694526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 47193638 - 47193571
Alignment:
Q  71 ttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttt 138  Q
    ||||| || |||||||||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  47193638 ttttgaggtttcacatcacaatgtaaaacccattccaaacactcttcatgtaaataagccaaaccttt 47193571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 26675477 - 26675529
Alignment:
Q  68 atgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatg 120  Q
    |||||||| ||||| | ||||||||||||||||||||||||||| ||||||||    
T  26675477 atgttttgaggctttatatcacaatgcaaaatccactccaaacattcttcatg 26675529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 26690604 - 26690552
Alignment:
Q  68 atgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatg 120  Q
    |||||||| ||||| |  |||||||||||||||||||||||||| ||||||||    
T  26690604 atgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatg 26690552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 26694765 - 26694713
Alignment:
Q  68 atgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatg 120  Q
    |||||||| ||||| |  |||||||||||||||||||||||||| ||||||||    
T  26694765 atgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatg 26694713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 26731915 - 26731863
Alignment:
Q  68 atgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatg 120  Q
    |||||||| ||||| |  |||||||||||||||||||||||||| ||||||||    
T  26731915 atgttttgcggctttatgtcacaatgcaaaatccactccaaacattcttcatg 26731863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 408
Target Start/End: Original strand, 29212966 - 29213357
Alignment:
Q  20 gacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat 119  Q
    ||||||||||||| |||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29212966 gacaaaccaaaatttgaaacttttgattgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat 29213065  T
Q  120 ggatataagccaaaccttttgcagtgcctaaagctatgccaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccattatc 219  Q
      ||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||  ||| |||| ||| ||||| |||||||||||||||||     
T  29213066 aaatataagccaaaccttttgcagtacctaaagccatgccaaatctttttctccaatccaaggtataagaccttaaatgttgtgctaaagaaccattata 29213165  T
Q  220 catgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaa---tgctgcttact 316  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||   ||||  |||||    
T  29213166 catgaactcatagacaaacattctatgtattccctctgcacaataaccccacaattcaatcaaattcatgtggttaagctttccaatattgctaattact 29213265  T
Q  317 tctgcgagaaactcttcttcgccttgatttgcttccttgagtctcttcaccgcgacaactcgttgatccaacaatacacctttgtaaacaat 408  Q
    |  ||  | ||||||||||| |||||||| |||||||||||||||||| | |  |||||| |||||| ||||||||||||||||||||||||    
T  29213266 ttggcttggaactcttcttcaccttgattagcttccttgagtctcttcgctgtaacaacttgttgatacaacaatacacctttgtaaacaat 29213357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 21130581 - 21130729
Alignment:
Q  203 gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttc 302  Q
    |||||||||||||| |||||| ||||||| || |  |||||||| || || ||  ||||||| ||||||||| ||||||||||||||||||||||||||     
T  21130581 gctaaagaaccattttccatgtactcatataccaaaattctatgcttaccttcaacacaatatccccacatttcaatcaaattcatgtggttaagctttt 21130680  T
Q  303 caatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 351  Q
    ||||| |||||||||| || ||||||||| |||| ||||| || |||||    
T  21130681 caatgatgcttacttcagcaagaaactctccttctccttgtttagcttc 21130729  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 53 - 307
Target Start/End: Complemental strand, 21108400 - 21108146
Alignment:
Q  53 ttagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagccaaaccttttgcagtgcctaaag 152  Q
    |||||||| | ||| |||||||||||||| | ||||||||||||||||||||||||||| |||||||| | ||| || ||| || ||||  |   ||||     
T  21108400 ttagaatcaagaagtatgttttgtggctttatatcacaatgcaaaatccactccaaacattcttcatgtagatatgctaaaactcttgctattgataaaa 21108301  T
Q  153 ctatgccaaatctttttccccaatccaatttattagactttatatgttctgctaaagaaccattatccatgaactcatacacaagcattctatgttttcc 252  Q
    | ||     | ||||| | |||||| | |||||||| |  ||  | ||| |||||||||||||| |||||| |||| || || |  | ||||| ||||||    
T  21108300 caattttgtaccttttactccaatcaagtttattagccgataagttttcggctaaagaaccattttccatgtactcgtaaaccaatagtctatattttcc 21108201  T
Q  253 ctctgcacaataaccccacattacaatcaaattcatgtggttaagctttccaatg 307  Q
    ||| || ||||| ||||||||| | |||||||||||||| |||||| ||||||||    
T  21108200 ctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttccaatg 21108146  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 18658743 - 18658891
Alignment:
Q  203 gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttc 302  Q
    |||||||| ||||| |||||| ||||||| || |  | |||||| || || || |||||||| ||||||||  ||||||| |||||||||||||||  ||    
T  18658743 gctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatatcaatcaagttcatgtggttaagccgtc 18658842  T
Q  303 caatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 351  Q
    ||||| |||||||||| || ||||| ||| |||| ||||| || |||||    
T  18658843 caatgatgcttacttcagcaagaaattctccttctccttgtttagcttc 18658891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 21098631 - 21098527
Alignment:
Q  203 gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttc 302  Q
    |||||||||||||| |||||| |||| || || |  | ||||| ||||||||| || ||||| ||||||||| | |||||||||||||| |||||| |||    
T  21098631 gctaaagaaccattttccatgtactcgtaaaccaatagtctatattttccctcagcgcaatatccccacatttcgatcaaattcatgtgattaagccttc 21098532  T
Q  303 caatg 307  Q
    |||||    
T  21098531 caatg 21098527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 203 - 351
Target Start/End: Original strand, 21111621 - 21111769
Alignment:
Q  203 gctaaagaaccattatccatgaactcatacacaagcattctatgttttccctctgcacaataaccccacattacaatcaaattcatgtggttaagctttc 302  Q
    |||||||| ||||| |||||| ||||||| || |  | |||||| || || || |||||||| ||||||||| | ||||| |||||||||||||||  ||    
T  21111621 gctaaagatccattttccatgtactcatataccaaaagtctatgcttaccttcagcacaatatccccacatttctatcaagttcatgtggttaagccgtc 21111720  T
Q  303 caatgctgcttacttctgcgagaaactcttcttcgccttgatttgcttc 351  Q
    ||||| | |||||||| || ||||| ||| |||| ||||| || |||||    
T  21111721 caatgatacttacttcggcaagaaattctccttctccttgtttagcttc 21111769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 21123264 - 21123373
Alignment:
Q  20 gacaaaccaaaatctgaaatctttggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcat 119  Q
    ||||| ||||||||||  | ||| |||||| | |||||||| | ||| || ||||| ||||| | ||||||||||||||||||||||| ||| |||||||    
T  21123264 gacaatccaaaatctgctaacttgggttgaaagttagaatcaagaagtatattttgaggctttatatcacaatgcaaaatccactccatacattcttcat 21123363  T
Q  120 ggatataagc 129  Q
    | | ||||||    
T  21123364 gtagataagc 21123373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 18658587 - 18658663
Alignment:
Q  53 ttagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagc 129  Q
    |||||||| | ||| |||||||| ||||| | |||||||||||||||||| |||||||| |||||||| | ||||||    
T  18658587 ttagaatcaagaagtatgttttgaggctttatatcacaatgcaaaatccattccaaacattcttcatgtagataagc 18658663  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 21130425 - 21130492
Alignment:
Q  53 ttagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatg 120  Q
    |||||||| | ||| || ||||| ||||| | |||||||||||||||||| |||||||| ||||||||    
T  21130425 ttagaatcaagaagtatattttgaggctttatatcacaatgcaaaatccattccaaacattcttcatg 21130492  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 39132320 - 39132235
Alignment:
Q  44 ggttgataattagaatccaaaagaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatggatataagc 129  Q
    |||||||| |||||||| | ||| || ||||| ||||| | ||||||||| ||||||||||||||||| |||||||| | ||||||    
T  39132320 ggttgatagttagaatcaagaagtatattttgaggctttatatcacaatgtaaaatccactccaaacattcttcatgtagataagc 39132235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 120
Target Start/End: Original strand, 11791091 - 11791146
Alignment:
Q  65 agaatgttttgtggcttcacatcacaatgcaaaatccactccaaacactcttcatg 120  Q
    |||||||||| |||||| | |||||||||||||| ||| ||||||||||| |||||    
T  11791091 agaatgttttctggcttaatatcacaatgcaaaacccattccaaacactcctcatg 11791146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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