View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17389_high_1 (Length: 689)

Name: NF17389_high_1
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17389_high_1
NF17389_high_1
[»] chr6 (5 HSPs)
chr6 (14-574)||(13828157-13828721)
chr6 (522-597)||(33096195-33096270)
chr6 (95-167)||(13836695-13836767)
chr6 (641-672)||(13825418-13825449)
chr6 (218-464)||(29055123-29055370)
[»] chr4 (3 HSPs)
chr4 (172-594)||(48804543-48804981)
chr4 (272-398)||(2601566-2601692)
chr4 (218-331)||(9777119-9777232)
[»] chr3 (6 HSPs)
chr3 (172-453)||(26254071-26254357)
chr3 (354-594)||(21495876-21496125)
chr3 (522-586)||(26253938-26254002)
chr3 (215-404)||(31547036-31547225)
chr3 (215-404)||(44887569-44887758)
chr3 (362-458)||(28958065-28958162)
[»] chr7 (11 HSPs)
chr7 (237-494)||(9599735-9599993)
chr7 (237-494)||(9827306-9827564)
chr7 (215-423)||(4615714-4615923)
chr7 (512-594)||(9599380-9599463)
chr7 (512-594)||(9826951-9827034)
chr7 (321-481)||(45201225-45201386)
chr7 (275-486)||(22820063-22820275)
chr7 (281-404)||(17053074-17053197)
chr7 (416-481)||(19048181-19048246)
chr7 (513-594)||(33589146-33589227)
chr7 (14-46)||(5490952-5490984)
[»] chr1 (1 HSPs)
chr1 (217-464)||(31874225-31874473)
[»] chr8 (1 HSPs)
chr8 (226-388)||(31263528-31263690)
[»] chr5 (3 HSPs)
chr5 (357-481)||(41730894-41731018)
chr5 (274-350)||(1593462-1593538)
chr5 (276-352)||(35303338-35303414)


Alignment Details
Target: chr6 (Bit Score: 464; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 14 - 574
Target Start/End: Complemental strand, 13828721 - 13828157
Alignment:
Q  14 catagggggtgaaaagtgcttttaagcctaaatattatttgatgactataaaagtgatcctatttgatatttatagggttattttttgtttatcatcagg 113  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     
T  13828721 catagggggtgaaaagtgcatttaagcctaaatattatttgatgactataaaagtgatcctatttgatatttatagggttattctttgtttatcatcaga 13828622  T
Q  114 aatgatcataatatagattctcaggatgattgtgttgttagactttttgtgtgtacttaagattcgatattggttgggcgtatctatagctgaaccgttc 213  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| || |||||||||     
T  13828621 aatgatcataatatagattctcaggatgattgtgttgttagactctttgtgtgtacttaagattcgatattggctgggcgtatctacaggtgaaccgttt 13828522  T
Q  214 ggtgtgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggtta 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||    
T  13828521 ggtgtgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgcttgtcgatcttttatgcatcttatttggatgtgttgtgtgtgggtta 13828422  T
Q  314 tttgaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggtgatgaaggcc 413  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13828421 tttgaaatgaaagaaacagtagggtcttcaaaaacaaggagagtaccatccatcagttggtagagaaagtcaaattacattctttatggtgatgaaggcc 13828322  T
Q  414 actaata----ttttcattcggcctaattttcatatgcggtgttcgaaccctttttattgtataggcattggttagtctatttttgtgtactcctttttt 509  Q
    |||||||    ||||||||| ||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||| ||||||||||||| ||||||    
T  13828321 actaatattttttttcattcagcctaattttcatatgcggtgttcgaacccttttctttgtataagcattggttagtctgtttttgtgtactcatttttt 13828222  T
Q  510 gtactgtgtacttttgaggattcttgagcacaccttgtgcttgaggatcctttcgtgtttctaat 574  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  13828221 gtactgtgtacttttgaggattcttgagcacaccttatgcttgaggatcctttcatgtttctaat 13828157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 522 - 597
Target Start/End: Original strand, 33096195 - 33096270
Alignment:
Q  522 tttgaggattcttgagcacaccttgtgcttgaggatcctttcgtgtttctaatacattcaatttttgcttgttaaa 597  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||    
T  33096195 tttgaggattcttgagcacaccttgtgcttgaggatccttttgtgtttctaatatattccatttttgcttgttaaa 33096270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 13836695 - 13836767
Alignment:
Q  95 ttttttgtttatcatcaggaatgatcataatatagattctcaggatgattgtgttgttagactttttgtgtgt 167  Q
    |||||||||||| | ||||| |||||||||||| |||| | ||||||||||||||||||||||||||||||||    
T  13836695 ttttttgtttataaccaggagtgatcataatattgattttgaggatgattgtgttgttagactttttgtgtgt 13836767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 672
Target Start/End: Complemental strand, 13825449 - 13825418
Alignment:
Q  641 gttagagagaaattataagtgtaataactaat 672  Q
    ||||||||||||||||||||||||||||||||    
T  13825449 gttagagagaaattataagtgtaataactaat 13825418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 464
Target Start/End: Complemental strand, 29055370 - 29055123
Alignment:
Q  218 tgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttatttg 317  Q
    |||||| ||||||||||| ||||||  |||| ||||||| ||  ||| ||| | | ||||| ||||| ||||  ||| |||| | | |||||||||| ||    
T  29055370 tgtcagatcatttttatctgtttgtgtattccgcaggtgcatatcgtactatttgctctttcatgcaacttacctggttgtgctctatgtgggttatgtg 29055271  T
Q  318 aaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggccact 416  Q
     |||||||||||||  || ||||||||||| | ||    ||   | || || |||||||||||| ||||| || | ||||| |||| ||||||||| |||    
T  29055270 gaatgaaagaaacaacagggtcttcaaaaatagggaccataatgttcaccaattggtagagaaaatcaaaatagagtctttttggtggatgaaggctact 29055171  T
Q  417 aatattttcattcggcctaattttcatatgcggtgttcgaaccctttt 464  Q
    |||||||  ||||    ||||||||||||| |||| || |||||||||    
T  29055170 aatatttctattcataataattttcatatgtggtggtcaaaccctttt 29055123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 172 - 594
Target Start/End: Complemental strand, 48804981 - 48804543
Alignment:
Q  172 aagattcgatattggttgggcgtatctatagctgaa-ccgttcggtgtgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgctagt 270  Q
    |||||||| |||||| | |||||||||| ||| ||| ||||| ||||||||||||||||||||| |||||||| ||||||||||||||| || |||| ||    
T  48804981 aagattcggtattggctaggcgtatctacagccgaaaccgtttggtgtgtcagctcatttttattagtttgtttattcagcaggtggatcgcatgcttgt 48804882  T
Q  271 agatcttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagt 370  Q
     |||||||||||||||||||||||||||||| |||||  ||||| || ||||||||||||||| | |||||||||||||||| |||||||||||||||||    
T  48804881 tgatcttttatgcagcttatttggatgtgttatgtgtacgttatatggaatgaaagaaacagtcgggtcttcaaaaacaaggagagtaccatccatcagt 48804782  T
Q  371 tggtagagaaagtcaaattacattctttatggt-gatgaaggccactaatattttcattcggcctaattttcatatgcggtgttcgaaccctttttattg 469  Q
    ||||||||||||| ||||| |||||||| |||| ||||||||| |||||||||| ||||| |||||||||||||||| ||||||| | |||||||  |||    
T  48804781 tggtagagaaagttaaattgcattctttctggtggatgaaggctactaatatttccattcagcctaattttcatatgtggtgttctagcccttttgtttg 48804682  T
Q  470 tataggcattggttagtctatttttgtgtactccttttt--------------tgtactgtgtacttttgaggattcttgagcacaccttgtgcttgagg 555  Q
    | | | |||| |||||  | ||||||||||||| |||||              |||||| ||||||||||||||||||||||||| ||||||||||||||    
T  48804681 tttggccatttgttagcttgtttttgtgtactcgttttttggactctgtattgtgtactttgtacttttgaggattcttgagcaccccttgtgcttgagg 48804582  T
Q  556 atcctttcgtgtttctaatacattcaatttttgcttgtt 594  Q
    ||||||| |||||||||| | |||| |||||| ||||||    
T  48804581 atccttttgtgtttctaaaatattccatttttccttgtt 48804543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 272 - 398
Target Start/End: Original strand, 2601566 - 2601692
Alignment:
Q  272 gatcttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagtt 371  Q
    ||||||||||||| || |||||| | ||||||||||| ||||| || ||||||||||| ||||| |||||| |||| |  | || |||||||||||| ||    
T  2601566 gatcttttatgcaactgatttggttatgttgtgtgtgagttatgtggaatgaaagaaatagtagggtcttcgaaaatacagagaataccatccatcattt 2601665  T
Q  372 ggtagagaaagtcaaattacattcttt 398  Q
    | ||||||||||||||||||| |||||    
T  2601666 gatagagaaagtcaaattacactcttt 2601692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 331
Target Start/End: Complemental strand, 9777232 - 9777119
Alignment:
Q  218 tgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttatttg 317  Q
    |||||| ||||||||||||||||||  |||| |||||||  |  ||| ||| | | ||||| ||||| ||||| ||| |||| | |||||||||| | ||    
T  9777232 tgtcagatcatttttatcagtttgtgtattccgcaggtgcctctcgtactattcgctctttcatgcaacttatatggttgtgctctgtgtgggttctgtg 9777133  T
Q  318 aaatgaaagaaaca 331  Q
     |||||||||||||    
T  9777132 gaatgaaagaaaca 9777119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 172 - 453
Target Start/End: Complemental strand, 26254357 - 26254071
Alignment:
Q  172 aagattcgatattggttgggcgtatctatagctgaaccgttcggtgtgtcagctcatttttatcagtttgttcattcagcaggtggat---tgcgtgcta 268  Q
    |||||||| || |||||||||||||||| ||| || ||||| ||||||||| ||||||||||||||| |||| |||||||||||||||   ||||||||     
T  26254357 aagattcggtactggttgggcgtatctacagccgagccgtttggtgtgtcaactcatttttatcagtatgtttattcagcaggtggatgattgcgtgctt 26254258  T
Q  269 gtagatcttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtagag-tcttcaaaaacaaggcgagtaccatccatc 367  Q
     | | ||||||||||||||||||||||||||||||| ||||||||| |  ||||||||||||||| | | |||||||||| |||| ||| ||||||||||    
T  26254257 ctcgttcttttatgcagcttatttggatgtgttgtgggtgggttatcttgaatgaaagaaacagtcggggtcttcaaaaataaggagagcaccatccatc 26254158  T
Q  368 agttggtagagaaagtcaaattacattctttatggt-gatgaaggccactaatattttcattcggcctaattttcatatgcggtgtt 453  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| |||||| ||||||||||||||| ||||||    
T  26254157 agttggtagagaaagtcaaattacattctttttggtggatgaaggctactaatatttccattcgacctaattttcatatgtggtgtt 26254071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 354 - 594
Target Start/End: Complemental strand, 21496125 - 21495876
Alignment:
Q  354 gagtaccatccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggccactaatattttcattcggcctaattttcatatgcggtgt 452  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| |||| ||||||||| ||||||| ||  ||||||||||||||||||||| |||||    
T  21496125 gagtatcatccattagttggtagagaaagtcaaattacattctttctggtggatgaaggctactaataattcaattcggcctaattttcatatgtggtgt 21496026  T
Q  453 tcgaaccctttttattgtataggcattggttagtctatttttgtgtactccttttttgtac--------tgtgtacttttgaggattcttgagcacacct 544  Q
    |||| |||||||  |||  | |||||||| ||   | ||||| ||||||| ||||||| ||        |||| |||||||||| |||||||||||||||    
T  21496025 tcgagcccttttgtttgcgtgggcattggataacatgtttttatgtactctttttttggactctgtaattgtgcacttttgaggtttcttgagcacacct 21495926  T
Q  545 tgtgcttgaggatcctttcgtgtttctaatacattcaatttttgcttgtt 594  Q
    ||||||| |||||||||| |||||||||||| |||| |||||||||||||    
T  21495925 tgtgcttaaggatccttttgtgtttctaatatattccatttttgcttgtt 21495876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 26254002 - 26253938
Alignment:
Q  522 tttgaggattcttgagcacaccttgtgcttgaggatcctttcgtgtttctaatacattcaatttt 586  Q
    |||||||||||||||||||||||||| ||| || ||||||| |||||||||||| |||| |||||    
T  26254002 tttgaggattcttgagcacaccttgtccttaagtatccttttgtgtttctaatatattccatttt 26253938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 404
Target Start/End: Complemental strand, 31547225 - 31547036
Alignment:
Q  215 gtgtgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttat 314  Q
    ||||||||| ||| ||||||||||||||  |||| ||| |||  |  ||| ||| | | |||||  |||| ||||||||| |||| | |||| |||||||    
T  31547225 gtgtgtcagatcacttttatcagtttgtgtattccgcaagtgcttcccgtactatttgctctttcttgcaacttatttggttgtgctctgtgggggttat 31547126  T
Q  315 ttgaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggtg 404  Q
     || | |||||||||||| || ||||||||||| ||||    |||| | || || |||||||||||| |||||||||| ||||| |||||    
T  31547125 gtggagtgaaagaaacagcagggtcttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaattacagtctttttggtg 31547036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 404
Target Start/End: Complemental strand, 44887758 - 44887569
Alignment:
Q  215 gtgtgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttat 314  Q
    ||||||||| ||||||||||||||||||  |||| ||||| |  |   || ||| | | |||||  |||| ||||||||| |||| | |||| |||||||    
T  44887758 gtgtgtcagatcatttttatcagtttgtgtattccgcaggggcctccagtactatttgctctttcttgcaacttatttggttgtgctctgtgggggttat 44887659  T
Q  315 ttgaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggtg 404  Q
     || | |||||||||||| || || |||||||| ||||    |||| | || || |||||||||||| |||||||||| ||||| |||||    
T  44887658 gtggagtgaaagaaacagcagggttttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaattacagtctttttggtg 44887569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 362 - 458
Target Start/End: Original strand, 28958065 - 28958162
Alignment:
Q  362 tccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggccactaatattttcattcggcctaattttcatatgcggtgttcgaac 458  Q
    ||||||| |||||||||||||| ||||||||||| || || | ||||||| |   ||||||||  ||||||||||| ||| ||||| |||| ||||||    
T  28958065 tccatcaattggtagagaaagttaaattacattccttttgatagatgaagacgtttaatatttatattcggcctaacttttatatgtggtgatcgaac 28958162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 1e-55; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 237 - 494
Target Start/End: Complemental strand, 9599993 - 9599735
Alignment:
Q  237 gtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtaga 336  Q
    ||||||| | ||| ||||||| ||||||||  || |||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |     
T  9599993 gtttgtttactcatcaggtggtttgcgtgcacgtcgatcttttatgcagcttatttggatgtgttgtgtgtgggtaatttggaataaaagaaacagtcgg 9599894  T
Q  337 gtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggccactaatattttcattcggccta 435  Q
     | ||||| || |||| ||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||| ||| |||||   || |||||||    
T  9599893 cttttcaagaataaggagagtaccatccatgagttggtagagaacgtcaaattacattctttctggtggatgaaggctactgatattacaatccggccta 9599794  T
Q  436 attttcatatgcggtgttcgaaccctttttattgtataggcattggttagtctattttt 494  Q
    ||||||||||| |||| |||| |||||||  |||| | |||||||| |||||| |||||    
T  9599793 attttcatatgtggtggtcgagcccttttgtttgtgtgggcattggctagtctgttttt 9599735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 237 - 494
Target Start/End: Complemental strand, 9827564 - 9827306
Alignment:
Q  237 gtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtaga 336  Q
    ||||||| | ||| ||||||| ||||||||  || |||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||| |     
T  9827564 gtttgtttactcatcaggtggtttgcgtgcacgtcgatcttttatgcagcttatttggatgtgttgtgtgtgggtaatttggaataaaagaaacagtcgg 9827465  T
Q  337 gtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggccactaatattttcattcggccta 435  Q
     | ||||| || |||| ||||||||||||| ||||||||||||| ||||||||||||||||| |||| ||||||||| ||| |||||   || |||||||    
T  9827464 cttttcaagaataaggagagtaccatccatgagttggtagagaacgtcaaattacattctttctggtggatgaaggctactgatattacaatccggccta 9827365  T
Q  436 attttcatatgcggtgttcgaaccctttttattgtataggcattggttagtctattttt 494  Q
    ||||||||||| |||| |||| |||||||  |||| | |||||||| |||||| |||||    
T  9827364 attttcatatgtggtggtcgagcccttttgtttgtgtgggcattggctagtctgttttt 9827306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 215 - 423
Target Start/End: Original strand, 4615714 - 4615923
Alignment:
Q  215 gtgtgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttat 314  Q
    ||||||||| ||||||||||||||||||  |||| |||||||  |  ||| ||| | | ||||| ||||| ||||| ||| |||| | ||||||||||||    
T  4615714 gtgtgtcagatcatttttatcagtttgtgtattccgcaggtgcctcccgtactatttgctctttcatgcaacttatctggttgtgctctgtgtgggttat 4615813  T
Q  315 ttgaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggcc 413  Q
     || | |||||||||||| |  ||||||||||| ||||    |||| | || || |||||||||||| ||||||| || ||||| |||| |||||||||     
T  4615814 gtggagtgaaagaaacagcaaggtcttcaaaaataaggaccataccgttcaccaattggtagagaaaatcaaatttcaatctttttggtggatgaaggct 4615913  T
Q  414 actaatattt 423  Q
    ||||||||||    
T  4615914 actaatattt 4615923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 594
Target Start/End: Complemental strand, 9599463 - 9599380
Alignment:
Q  512 actgtgtacttttgaggattcttgagcacaccttgtgcttgaggatcctttcgtgtttctaata-cattcaatttttgcttgtt 594  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||  |||| |||||||||||||    
T  9599463 actgtatacttttgaggtttctttagcacaccttgtgcttgaggatccttctgtgtttctaatataattccatttttgcttgtt 9599380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 512 - 594
Target Start/End: Complemental strand, 9827034 - 9826951
Alignment:
Q  512 actgtgtacttttgaggattcttgagcacaccttgtgcttgaggatcctttcgtgtttctaata-cattcaatttttgcttgtt 594  Q
    ||||| ||||||||||| ||||| ||||||||||||||||||||||||||  ||||||||||||  |||| |||||||||||||    
T  9827034 actgtatacttttgaggtttctttagcacaccttgtgcttgaggatccttctgtgtttctaatataattccatttttgcttgtt 9826951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 321 - 481
Target Start/End: Complemental strand, 45201386 - 45201225
Alignment:
Q  321 tgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggccactaat 419  Q
    ||||||||||||| | ||||||||||| | ||    || ||| ||||| |||  ||||||| ||||||||||||||||||||| ||||||||| ||||||    
T  45201386 tgaaagaaacagtcgggtcttcaaaaatatggaccataacattcatcaattgacagagaaaatcaaattacattctttatggtagatgaaggctactaat 45201287  T
Q  420 attttcattcggcctaattttcatatgcggtgttcgaaccctttttattgtataggcattgg 481  Q
    ||||| ||| | | ||||||||||||| || | || |||||||||  |||| | ||||||||    
T  45201286 atttttatttgtcataattttcatatgtggcgatcaaacccttttgtttgttttggcattgg 45201225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 275 - 486
Target Start/End: Original strand, 22820063 - 22820275
Alignment:
Q  275 cttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggt 374  Q
    |||| ||||| ||||||||| |||||| | |||||||| | || |||||||||||||| || ||||||||||| | ||     ||  | || || |||||    
T  22820063 ctttcatgcaacttatttggttgtgttctatgtgggttctgtggaatgaaagaaacagcagggtcttcaaaaatagggaacacactgttcaccaattggt 22820162  T
Q  375 agagaaagtcaaattacattctttatggt-gatgaaggccactaatattttcattcggcctaattttcatatgcggtgttcgaaccctttttattgtata 473  Q
    ||||||| ||||| | || || || |||| ||||||||| ||||||||||  |||||   ||||||||||||| ||||||| | |||||||  |||| |     
T  22820163 agagaaaatcaaagtgcaatccttttggtggatgaaggctactaatatttctattcgtaataattttcatatgtggtgttcaagcccttttgtttgtttg 22820262  T
Q  474 ggcattggttagt 486  Q
    |||||||| ||||    
T  22820263 ggcattggctagt 22820275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 404
Target Start/End: Complemental strand, 17053197 - 17053074
Alignment:
Q  281 tgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaa 380  Q
    |||| ||||||||| |||| | |||| ||||||| || | |||||||||||| || || |||||||| ||||    |||| | || || |||||||||||    
T  17053197 tgcaacttatttggttgtgctctgtgggggttatgtggagtgaaagaaacagcagggtattcaaaaataaggaccataccgttcaccaattggtagagaa 17053098  T
Q  381 agtcaaattacattctttatggtg 404  Q
    | |||||||||| ||||| |||||    
T  17053097 aatcaaattacagtctttctggtg 17053074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 481
Target Start/End: Complemental strand, 19048246 - 19048181
Alignment:
Q  416 taatattttcattcggcctaattttcatatgcggtgttcgaaccctttttattgtataggcattgg 481  Q
    ||||||||| ||||| ||||||||||||||| |||| || | |||||||  |||||| ||||||||    
T  19048246 taatatttttattcgacctaattttcatatgtggtggtcaagcccttttgtttgtatgggcattgg 19048181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 594
Target Start/End: Original strand, 33589146 - 33589227
Alignment:
Q  513 ctgtgtacttttgaggattcttgagcacaccttgtgcttgaggatcctttcgtgtttctaatacattcaatttttgcttgtt 594  Q
    |||| ||||||||||  ||||  ||||||||||||||||||| |  || | |||||||||||| |||| ||||||| |||||    
T  33589146 ctgtatacttttgagctttctctagcacaccttgtgcttgagaaatctcttgtgtttctaatatattccatttttgtttgtt 33589227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 5490952 - 5490984
Alignment:
Q  14 catagggggtgaaaagtgcttttaagcctaaat 46  Q
    ||||||||||||||||||| |||||||||||||    
T  5490952 catagggggtgaaaagtgcatttaagcctaaat 5490984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 9e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 217 - 464
Target Start/End: Original strand, 31874225 - 31874473
Alignment:
Q  217 gtgtcagctcatttttatcagtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttattt 316  Q
    ||||||| || |||||||||||||||| |||  |||||||| | |||| |  || |||||||| || ||||||||||| ||| |||||||||||| || |    
T  31874225 gtgtcagatcgtttttatcagtttgtttattgcgcaggtggctcgcgtacccgtcgatcttttgtgtagcttatttggttgtattgtgtgtgggtcatgt 31874324  T
Q  317 gaaatgaaagaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggccac 415  Q
    | ||||||||||| ||| |  |||||||||| | || ||| |||||||| || |||||||||||||||||||||||||| || |||| ||||||| | |     
T  31874325 ggaatgaaagaaatagtcggatcttcaaaaatatggagagcaccatccaccaattggtagagaaagtcaaattacattccttttggtggatgaagactat 31874424  T
Q  416 taatattttcattcggcctaattttcatatgcggtgttcgaaccctttt 464  Q
    ||||||||  ||| || |||||||||||||| |||| |||| |||||||    
T  31874425 taatatttctatttgggctaattttcatatgtggtggtcgagccctttt 31874473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 226 - 388
Target Start/End: Complemental strand, 31263690 - 31263528
Alignment:
Q  226 catttttatcagtttgttcattcagcaggtggattgcgtgctagtagatcttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaa 325  Q
    |||||||||||||||||| | ||||||||||| |||||| || || | || ||| |||| ||| ||||| | |||||||||||| || | || |||||||    
T  31263690 catttttatcagtttgtttactcagcaggtgggttgcgtactcgtcgttcctttctgcaacttgtttggttatgttgtgtgtggattgtgtggaatgaaa 31263591  T
Q  326 gaaacagtagagtcttcaaaaacaaggcgagtaccatccatcagttggtagagaaagtcaaat 388  Q
    |||||||| ||||||||||||| |  | |||| |||| ||||| |||||||||||||||||||    
T  31263590 gaaacagttgagtcttcaaaaatacagagagtgccattcatcaattggtagagaaagtcaaat 31263528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 357 - 481
Target Start/End: Complemental strand, 41731018 - 41730894
Alignment:
Q  357 taccatccatcagttggtagagaaagtcaaattacattctttatggt-gatgaaggccactaatattttcattcggcctaattttcatatgcggtgttcg 455  Q
    |||||||||||| || |||||||||||||||||||| ||||| |||| |||||||     ||||||||  ||| ||||||||||||||||  |||| ||     
T  41731018 taccatccatcattttgtagagaaagtcaaattacactctttttggtggatgaagaagtttaatatttctatt-ggcctaattttcatatctggtggtca 41730920  T
Q  456 aaccctttttattgtataggcattgg 481  Q
    |||||||||  ||||||  |||||||    
T  41730919 aacccttttgtttgtatgagcattgg 41730894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 274 - 350
Target Start/End: Original strand, 1593462 - 1593538
Alignment:
Q  274 tcttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtagagtcttcaaaaacaa 350  Q
    |||||||||||| || ||||| | |||||  |||||||| | |||||||||||||||| |||||| ||||| |||||    
T  1593462 tcttttatgcagtttgtttggctttgttgcatgtgggttttatgaaatgaaagaaacaatagagttttcaagaacaa 1593538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 276 - 352
Target Start/End: Complemental strand, 35303414 - 35303338
Alignment:
Q  276 ttttatgcagcttatttggatgtgttgtgtgtgggttatttgaaatgaaagaaacagtagagtcttcaaaaacaagg 352  Q
    ||||||||||||| ||||  | ||||||||||||||| | ||| | |||||||| | |||| |||||||||| ||||    
T  35303414 ttttatgcagcttgtttgactttgttgtgtgtgggttctatgacacgaaagaaataatagaatcttcaaaaataagg 35303338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University