View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17389_high_10 (Length: 325)
Name: NF17389_high_10
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 43062906 - 43062600
Alignment:
| Q |
1 |
catatcttttggtgcgattcctctattatttctggggaaggtacaaaccattcataatatttttaaaatgttcctcagattcaaatattggctatagtca |
100 |
Q |
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| T |
43062906 |
catatcttttggtgcgattcctctattatttttggggaaggtacaaaccattcataatatttttaaaatgttcctcagattcaaatattagttatagtca |
43062807 |
T |
|
| Q |
101 |
cccttatgattattcaactctgtaataagtgttctacaaataatagaatgtctttcttcaatcataccatccactttgacatccttagatttcactctgc |
200 |
Q |
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| T |
43062806 |
ctcttatgattactcaaccctgtaataagtgttctacaaataatagaatgtctttcttcaatcataccatccactttgacatccttagatttcactctgg |
43062707 |
T |
|
| Q |
201 |
agcctgtgatgcatttaattagttctaacgtttttagcaatataaaactaacaaattgatgtggtaattttagggaaaacaacaacgacaacattcatca |
300 |
Q |
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| T |
43062706 |
agcttgtcatgcat----ttagttctaatgtttttagcaatataaaattaacaagttgatgtggtaattttagggaaaacaacaacgacaacattcatca |
43062611 |
T |
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| Q |
301 |
gtgtaatatct |
311 |
Q |
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||||||||||| |
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| T |
43062610 |
gtgtaatatct |
43062600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 24591539 - 24591588
Alignment:
| Q |
168 |
catccactttgacatccttagatttcactctgcagcctgtgatgcattta |
217 |
Q |
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| T |
24591539 |
catccactttgacattcttagatttgagtctgcagtctctgatgcattta |
24591588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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