View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17389_high_14 (Length: 253)
Name: NF17389_high_14
Description: NF17389
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17389_high_14 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold1393 (1 HSPs) |
| | |
|
| [»] scaffold0029 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 2064087 - 2064327
Alignment:
| Q |
14 |
acaatataacggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattcttttta |
113 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
2064087 |
acaatataatggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcattgtgtgaactatattgtcacaaaaattcttttca |
2064186 |
T |
|
| Q |
114 |
atgtgcataaca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgtacg |
211 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2064187 |
atgtgcataacatcaagattatgtcttagtaaattgtctttccagtaagggaggtccc-aaaaatacttcttttggtccaattgtggtctacaccgtacg |
2064285 |
T |
|
| Q |
212 |
tatccttcatctgatgttatcttgggaggcggaccatctttt |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2064286 |
tatccttcatctgatgttatcttgggaggcggaccatctttt |
2064327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 209
Target Start/End: Original strand, 22123587 - 22123756
Alignment:
| Q |
42 |
ttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgtctta |
139 |
Q |
| |
|
||||||||||||||||| || || |||| ||||||||||| || ||| |||||| |||||||||| | ||||||||| ||| |||||||||||| | |
|
|
| T |
22123587 |
ttctcattatcttttgtcttccctttaacatccatcactgtgttaaatatgttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctga |
22123686 |
T |
|
| Q |
140 |
gtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
| || || |||||||| || ||||||| |||||| |||||| |||| ||||| | |||||| || ||||| |
|
|
| T |
22123687 |
gcaagttatctttccaataggggaggttccaaaatatacttttttttgtccagtggtggtcaactccgta |
22123756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 37571031 - 37571204
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
|||||||||| | ||||||||||| || ||||| ||||||||||| || ||| |||||| | | |||||| | ||||||||| ||| |||||||||| |
|
|
| T |
37571031 |
agccttctcagtgtcttttgtttttcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagattatgt |
37571130 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| || || || |||||||| || |||||||||||||| ||||| ||||| ||||| | |||||||| ||||| |
|
|
| T |
37571131 |
ctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtgatggtctactccgta |
37571204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 14899328 - 14899141
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14899328 |
ggcaaatccattctagccttctcgttatcttttgttttaccagagacattcatcactgtgttaactatattgtcacaaaaattcttttcaatgtgcataa |
14899229 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14899228 |
catccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggtccaattgtgttctacaccgta |
14899141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 7407280 - 7407451
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
7407280 |
ggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaattatattgtcacaaaagttcttttcaatgtgcataa |
7407379 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaat |
193 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
7407380 |
catcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggtccaat |
7407451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 31270 - 31457
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31270 |
ggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaactatattgtcacaaaaattcttttcaatgtgcataa |
31369 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
31370 |
catccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggtccaattgtgttctacaccgta |
31457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 14808457 - 14808270
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14808457 |
ggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaactatattgtcacaaaaattcttttcaatgtgcataa |
14808358 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14808357 |
catccagattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggtccaattgtgttctacaccgta |
14808270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 193
Target Start/End: Complemental strand, 22330010 - 22329845
Alignment:
| Q |
30 |
tccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aa |
127 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||| || |
|
|
| T |
22330010 |
tccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataacatcaa |
22329911 |
T |
|
| Q |
128 |
gattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaat |
193 |
Q |
| |
|
|||||||||| | |||||| |||||| |||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
22329910 |
gattatgtctcaataaattatctttctagtaagggagatcccagaaaatacttcttttggtccaat |
22329845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 38969563 - 38969736
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| || ||| |||||| | | |||||| | ||||||||| ||| |||||||||| |
|
|
| T |
38969563 |
agccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagattatgt |
38969662 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| || || || |||||||| || |||||||||||||| ||||| ||||| ||||| | ||||||||| ||||| |
|
|
| T |
38969663 |
ctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtggtctactccgta |
38969736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 54953877 - 54953958
Alignment:
| Q |
114 |
atgtgcataaca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaat |
193 |
Q |
| |
|
|||||||||||| |||||||||||| | |||||| ||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
54953877 |
atgtgcataacatcaagattatgtctcaataaattatctttccagtaagggagatcccagaagatacttcttttggtccaat |
54953958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 69 - 179
Target Start/End: Original strand, 10799883 - 10799995
Alignment:
| Q |
69 |
acattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgtcttagtaaattgtctttccagtaagggaggt |
166 |
Q |
| |
|
|||| ||||||| ||| || ||| |||||| |||||||||| | ||||||||| ||| |||||||||||| || || || |||||||| || ||||||| |
|
|
| T |
10799883 |
acatccatcactatgttaaatatgttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctgagcaagttatctttccaatatgggaggt |
10799982 |
T |
|
| Q |
167 |
cccaaaaaatact |
179 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
10799983 |
cccaaaatatact |
10799995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 24 - 209
Target Start/End: Original strand, 358586 - 358773
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
358586 |
ggcaaatccattctagctttctcgttatcttttgttttaccagagacattcatcactgtgttaactatattgtcacaaaaattcttttcaatgtgcataa |
358685 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
358686 |
catccatattatgtcttagtaaattgtctttccagtaagggagatcccaaaaaatacttcttttggtccaattgtgttctacaacgta |
358773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 21597043 - 21596857
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21597043 |
ggcaaatccattctagccttctcgttatcttttgttttactagagacattcatcactgtgttaactatattgtcacaaaaattcttttcaatgtgcataa |
21596944 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
21596943 |
catccagattatgtcttagtaaattgtctttccag-aagggagatccaaaaaaatacttcttttggtccaattgtgttctacaccgta |
21596857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 4965362 - 4965535
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| || ||| |||||| | | |||||| | ||||||||| ||| |||||||||| |
|
|
| T |
4965362 |
agccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagattatgt |
4965461 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| || || || |||||||| || |||||||||||||| ||||| ||||| ||||| | ||||||||| ||||| |
|
|
| T |
4965462 |
ctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtggtctactccgta |
4965535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 209
Target Start/End: Complemental strand, 35596963 - 35596790
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| || ||| |||||| | | |||||| | ||||||||| ||| |||||||||| |
|
|
| T |
35596963 |
agccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagattatgt |
35596864 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| || || || |||||||| || |||||||||||||| ||||| ||||| ||||| | ||||||||| ||||| |
|
|
| T |
35596863 |
ctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtggtctactccgta |
35596790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 37367688 - 37367837
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| || ||| |||||| | | |||||| | ||||||||| ||| |||||||||| |
|
|
| T |
37367688 |
agccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagattatgt |
37367787 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttctttt |
185 |
Q |
| |
|
|| || || || |||||||| || | |||||||||||| ||||| ||||| |
|
|
| T |
37367788 |
ctgagcaagttatctttccaatatgagaggtcccaaaatatactcctttt |
37367837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 38 - 197
Target Start/End: Complemental strand, 13566737 - 13566576
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||| |||||||||| |
|
|
| T |
13566737 |
agccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaatattcttttcaatgtgcataacatcaagattatgt |
13566638 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtg |
197 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
13566637 |
cttagtaaattgtctttccagtaaggaaggtcccaaaaaatacttcttttgatccaattgtg |
13566576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 4806448 - 4806619
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
4806448 |
ggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaattatattgtcacaaaagttcttttcaatgtgcataa |
4806547 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaat |
193 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
4806548 |
catcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggtccaat |
4806619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 193
Target Start/End: Original strand, 12765065 - 12765236
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
12765065 |
ggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaattatattgtcacaaaagttcttttcaatgtgcataa |
12765164 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaat |
193 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
12765165 |
catcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggtccaat |
12765236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 7302266 - 7302439
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| || ||| |||||| | | |||||| | ||||||||| ||| |||||||||| |
|
|
| T |
7302266 |
agccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagattatgt |
7302365 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| || || || |||||||| || |||||||||||||| ||||| ||||| ||||| | ||||||||| ||||| |
|
|
| T |
7302366 |
ctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtggtctactccgta |
7302439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 18338149 - 18338322
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| || ||| |||||| | | |||||| | ||||||||| ||| |||||||||| |
|
|
| T |
18338149 |
agccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagattatgt |
18338248 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| || || || |||||||| || |||||||||||||| ||||| ||||| ||||| | ||||||||| ||||| |
|
|
| T |
18338249 |
ctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtggtctactccgta |
18338322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 2765990 - 2765825
Alignment:
| Q |
16 |
aatataacggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaat |
115 |
Q |
| |
|
||||||| || |||| ||||| ||||||||||||||||||||||||||| |||||||||||||| |||| || ||| ||| || |||| |||||||| |
|
|
| T |
2765990 |
aatataatggtaaattcattctagccttctcattatcttttgttttaccgcagacattcatcactcaatgaaatacattatcataacaatt-tttttaat |
2765892 |
T |
|
| Q |
116 |
gtgcataaca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttctt |
183 |
Q |
| |
|
||| ||||| |||||||||||| ||| |||||||||| | ||||||| || |||||||||| ||||| |
|
|
| T |
2765891 |
atgcttaacatcaagattatgtctgagt--attgtctttcgactaagggaagt-ccaaaaaatatttctt |
2765825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 20149288 - 20149115
Alignment:
| Q |
26 |
caaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca |
125 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
20149288 |
caaatccagtctagccttctcattatcttttgttttacctgagacattcatcactgtgtgaagtatattgtcaaaaaaattcttttcaatgtgcataaca |
20149189 |
T |
|
| Q |
126 |
--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtg |
197 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
20149188 |
tcaagattatgtctcagtaaattgtctttccaataaggaaggtcccaaaaaatacttcttttgatccaattgtg |
20149115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 23010704 - 23010533
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
23010704 |
ggcaagtccattctagccttctcattatcttttgttttagcagagacattcatcactatgtgaattatattgtcacaaaagttcttttcaatgtgcataa |
23010605 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaat |
193 |
Q |
| |
|
|| || ||||||||| |||||||| ||||||||||||||||| ||||| || ||||| ||||||||||||| |
|
|
| T |
23010604 |
catcaaaattatgtctcagtaaattatctttccagtaagggagatcccagaagatactccttttggtccaat |
23010533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 209
Target Start/End: Original strand, 33905205 - 33905378
Alignment:
| Q |
38 |
agccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgt |
135 |
Q |
| |
|
|||||||||||| ||||||||||| || ||||| ||||||||||| || ||| |||||| | | |||||| | ||||||||| ||| |||||||||| |
|
|
| T |
33905205 |
agccttctcattgtcttttgttttgcctttgacatccatcactgtgttaaatatgttgtcaaagacattcttctcaatgtgcattacatcaagattatgt |
33905304 |
T |
|
| Q |
136 |
cttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
|| || || || |||||||| || |||||||||||||| ||||| ||||| ||||| | ||||||||| ||||| |
|
|
| T |
33905305 |
ctgagcaagttatctttccaatatgggaggtcccaaaatatactccttttagtccagtggtggtctactccgta |
33905378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1393 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold1393
Description:
Target: scaffold1393; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 427 - 256
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
427 |
ggcaagtccattctagccttctcattatcttttgttttaccagagacattcatcactgtgtgaattatattgtcacaaaagttcttttcaatgtgcataa |
328 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaat |
193 |
Q |
| |
|
|| |||||||||||| |||||||| ||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
327 |
catcaagattatgtctcagtaaattatctttccagtaagggagatcccagaagatacttcttttggtccaat |
256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 14322720 - 14322547
Alignment:
| Q |
26 |
caaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca |
125 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
14322720 |
caaatccagtctagccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaaaattcttttcaatgtgcataaca |
14322621 |
T |
|
| Q |
126 |
--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
14322620 |
tcaagattatgtcttagtaaattgtctttcaagtaaggaaggtcccagaaaatacttcttttgatccagttgtg |
14322547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 28498115 - 28498239
Alignment:
| Q |
24 |
ggcaaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataa |
123 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
28498115 |
ggcaagtccattctagccttctcattatcttttgatttaccagagacattcatcaccgtgtgaattatattgtcacaaaagttcttttcaatgtgcataa |
28498214 |
T |
|
| Q |
124 |
ca--aagattatgtcttagtaaatt |
146 |
Q |
| |
|
|| |||||||||||| | |||||| |
|
|
| T |
28498215 |
catcaagattatgtctcaataaatt |
28498239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 42 - 209
Target Start/End: Complemental strand, 28955274 - 28955105
Alignment:
| Q |
42 |
ttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgtctta |
139 |
Q |
| |
|
||||||||||||||||| || || |||| ||||||||||| || ||| |||||| |||||||||| | ||||||||| ||| |||||||||||| | |
|
|
| T |
28955274 |
ttctcattatcttttgtcttccctttaacatccatcactgtgttaaatatgttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctga |
28955175 |
T |
|
| Q |
140 |
gtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtggtctacaccgta |
209 |
Q |
| |
|
| || || |||||||| || |||||||||||||| |||||| |||| ||||| | |||||| || ||||| |
|
|
| T |
28955174 |
gcaagttatctttccaataggggaggtcccaaaatatacttttttttgtccagtggtggtcaactccgta |
28955105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 23959338 - 23959165
Alignment:
| Q |
26 |
caaatccattccagccttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca |
125 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||| |||||||| ||||||||||||| |
|
|
| T |
23959338 |
caaatccagtctagccttctcattatcttttgttttaccggagacattcatcactgtgtgaagtatattgtcaaaaatattcttttcaatgtgcataaca |
23959239 |
T |
|
| Q |
126 |
--aagattatgtcttagtaaattgtctttccagtaagggaggtcccaaaaaatacttcttttggtccaattgtg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||| ||||| |
|
|
| T |
23959238 |
tcaagattatgtcttagtaaattgtctttcaagtaaggaaggtcccagaaaatacttcttttgatccagttgtg |
23959165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0029 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0029
Description:
Target: scaffold0029; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 179
Target Start/End: Original strand, 57705 - 57844
Alignment:
| Q |
42 |
ttctcattatcttttgttttaccagagacattcatcactgtgtgaactatattgtcacaaaaattctttttaatgtgcataaca--aagattatgtctta |
139 |
Q |
| |
|
||||||||||||||||| || || |||| ||||||||||| || ||| |||||| |||||||||| | ||||||||| ||| |||||||||||| | |
|
|
| T |
57705 |
ttctcattatcttttgtcttccctttaacatccatcactgtgttaaatatgttgtcaaaaaaattcttctcaatgtgcattacatcaagattatgtctga |
57804 |
T |
|
| Q |
140 |
gtaaattgtctttccagtaagggaggtcccaaaaaatact |
179 |
Q |
| |
|
| || || |||||||| || |||||||||||||| ||||| |
|
|
| T |
57805 |
gcaagttatctttccaataggggaggtcccaaaatatact |
57844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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